- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
FEG.2: 19 residues within 4Å:- Chain A: R.23, L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, M.136, G.137, V.138, F.139, P.159, I.160, L.180, I.181, R.182
- Ligands: ATP.1
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:L.24, A:L.24, A:A.110, A:T.135, A:V.138, A:F.139
- Hydrogen bonds: A:R.23, A:L.24, A:G.112, A:T.114, A:L.115, A:T.135, A:G.137, A:V.138, A:I.181, A:R.182, A:R.182
FEG.5: 19 residues within 4Å:- Chain B: R.23, L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, M.136, G.137, V.138, F.139, P.159, I.160, L.180, I.181, R.182
- Ligands: ATP.4
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:L.24, B:L.24, B:A.110, B:T.135, B:V.138, B:F.139
- Hydrogen bonds: B:R.23, B:L.24, B:G.112, B:T.114, B:L.115, B:T.135, B:G.137, B:V.138, B:I.181, B:R.182, B:R.182
FEG.8: 19 residues within 4Å:- Chain C: R.23, L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, M.136, G.137, V.138, F.139, P.159, I.160, L.180, I.181, R.182
- Ligands: ATP.7
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:L.24, C:L.24, C:A.110, C:T.135, C:V.138, C:F.139
- Hydrogen bonds: C:R.23, C:L.24, C:G.112, C:T.114, C:L.115, C:T.135, C:G.137, C:V.138, C:I.181, C:R.182, C:R.182
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: K.50, Y.68
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.68
- Salt bridges: A:K.50
SO4.6: 2 residues within 4Å:- Chain B: K.50, Y.68
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.68
- Salt bridges: B:K.50
SO4.9: 2 residues within 4Å:- Chain C: K.50, Y.68
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.68
- Salt bridges: C:K.50
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujishiro, T. et al., Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- Hmd co-occurring protein HcgE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujishiro, T. et al., Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- Hmd co-occurring protein HcgE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B