- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
FEG.2: 19 residues within 4Å:- Chain A: L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, G.137, V.138, F.139, P.159, I.160, K.179, I.181, R.182
- Chain C: H.36, R.37
- Ligands: ATP.1
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:L.24, A:A.110, A:V.138, A:F.139
- Hydrogen bonds: A:G.112, A:D.113, A:T.114, A:T.135, A:G.137, A:V.138, A:I.181, A:R.182
- Salt bridges: C:H.36, C:R.37
FEG.8: 19 residues within 4Å:- Chain A: H.36, R.37
- Chain B: L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, G.137, V.138, F.139, P.159, I.160, K.179, I.181, R.182
- Ligands: ATP.7
14 PLIP interactions:12 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.24, B:A.110, B:V.138, B:F.139
- Hydrogen bonds: B:G.112, B:D.113, B:T.114, B:T.135, B:G.137, B:V.138, B:I.181, B:R.182
- Salt bridges: A:H.36, A:R.37
FEG.14: 19 residues within 4Å:- Chain B: H.36, R.37
- Chain C: L.24, I.109, A.110, G.112, D.113, T.114, L.115, T.135, G.137, V.138, F.139, P.159, I.160, K.179, I.181, R.182
- Ligands: ATP.13
14 PLIP interactions:12 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:L.24, C:A.110, C:V.138, C:F.139
- Hydrogen bonds: C:G.112, C:D.113, C:T.114, C:T.135, C:G.137, C:V.138, C:I.181, C:R.182
- Salt bridges: B:H.36, B:R.37
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: F.81, S.82
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.81
SO4.4: 2 residues within 4Å:- Chain A: Y.124, R.128
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.124
- Salt bridges: A:R.128
SO4.5: 1 residues within 4Å:- Chain A: E.120
No protein-ligand interaction detected (PLIP)SO4.6: 1 residues within 4Å:- Chain A: R.59
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.59
SO4.9: 2 residues within 4Å:- Chain B: F.81, S.82
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.81
SO4.10: 2 residues within 4Å:- Chain B: Y.124, R.128
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.124
- Salt bridges: B:R.128
SO4.11: 1 residues within 4Å:- Chain B: E.120
No protein-ligand interaction detected (PLIP)SO4.12: 1 residues within 4Å:- Chain B: R.59
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.59
SO4.15: 2 residues within 4Å:- Chain C: F.81, S.82
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.81
SO4.16: 2 residues within 4Å:- Chain C: Y.124, R.128
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.124
- Salt bridges: C:R.128
SO4.17: 1 residues within 4Å:- Chain C: E.120
No protein-ligand interaction detected (PLIP)SO4.18: 1 residues within 4Å:- Chain C: R.59
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujishiro, T. et al., Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- Hmd co-occurring protein HcgE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
CC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujishiro, T. et al., Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- Hmd co-occurring protein HcgE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
CC
C