SMTL ID : 3zg6.1

The novel de-long chain fatty acid function of human sirt6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.141, C.144, C.166, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.166, A:C.177

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 23 residues within 4Å: Chain A: G.52, A.53, G.54, T.57, D.63, F.64, R.65, W.71, Q.113, H.133, G.214, T.215, S.216, L.217, I.219, N.240, L.241, Q.242, G.256, Y.257, V.258 Chain B: X.6 Ligands: GOL.4 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.53, A:T.57, A:T.57, A:F.64, A:R.65, A:Q.113, A:H.133, A:S.216, A:L.217, A:N.240, A:L.241, A:Q.242, A:Q.242, A:V.258 Water bridges: A:T.57, A:R.65 Salt bridges: A:R.65, A:R.65, A:R.65

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: K.245, H.246, R.248, H.249 Chain B: W.11, W.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.245 GOL.4: 6 residues within 4Å: Chain A: E.22, T.57, D.63, G.66, P.67 Ligands: APR.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.22, A:T.57, A:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., Sirt6 Regulates Tnf-Alpha Secretion Through Hydrolysis of Long-Chain Fatty Acyl Lysine. Nature (2013)

Release Date

2013-04-03

Peptides

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6: A
PEPTIDE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6

PEPTIDE

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