SMTL ID : 3zg8.1

Crystal Structure of Penicillin Binding Protein 4 from Listeria monocytogenes in the Ampicillin bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AIX: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Covalent)

AIX.1: 18 residues within 4Å: Chain B: G.216, S.217, K.220, V.255, N.271, S.272, N.274, T.384, T.399, G.400, S.401, T.402, Q.403, G.411, T.412, T.444, S.446 Ligands: GOL.2 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:V.255, B:Q.403, B:T.412 Hydrogen bonds: B:S.217, B:S.217, B:S.272, B:S.272, B:S.272, B:N.274, B:T.399, B:S.401, B:S.401, B:S.446 Water bridges: B:S.401 Salt bridges: B:K.398

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain B: Y.250, L.311, T.402, Q.403 Ligands: AIX.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.250, B:Y.250, B:Q.403 GOL.3: 6 residues within 4Å: Chain B: A.170, N.171, E.438, H.439, Y.440, T.442 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.171, B:N.171, B:Y.440, B:Y.440, B:Y.440 GOL.4: 6 residues within 4Å: Chain B: K.212, A.213, Q.214, K.413, D.414, W.429 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.214, B:K.413 Water bridges: B:K.413, B:D.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, J. et al., Crystal Structures of Bifunctional Penicillin-Binding Protein 4 from Listeria Monocytogenes. Antimicrob.Agents Chemother. (2013)

Release Date

2013-05-29

Peptides

PENICILLIN-BINDING PROTEIN: A
PENICILLIN-BINDING PROTEIN 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PENICILLIN-BINDING PROTEIN

PENICILLIN-BINDING PROTEIN 4

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