SMTL ID : 3zg9.1

Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the Cefuroxime bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DXF: (2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

DXF.1: 16 residues within 4Å: Chain B: G.216, S.217, V.255, S.272, N.274, T.384, T.399, G.400, S.401, T.402, Q.403, G.411, T.412, T.444, S.445, S.446 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Q.403 Hydrogen bonds: B:S.217, B:S.272, B:S.272, B:N.274, B:T.399, B:S.401, B:S.401, B:S.401, B:Q.403, B:T.444, B:S.446, B:S.446

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain B: K.212, A.213, K.413, D.414, W.429, Y.432, D.433, T.435 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.212, B:D.414, B:T.435, B:T.435 Water bridges: B:D.433, B:T.435 GOL.3: 7 residues within 4Å: Chain B: T.373, L.377, E.394, M.395, Y.420, T.421, P.422 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.394 GOL.4: 4 residues within 4Å: Chain B: Q.230, K.295, I.363, I.364 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.230, B:K.295, B:K.295 GOL.5: 3 residues within 4Å: Chain B: S.231, G.232, Y.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.231 Water bridges: B:Y.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, J.H. et al., Crystal Structures of Penicillin-Binding Protein 4 from Listeria Monocytogenes. To be Published

Release Date

2014-01-15

Peptides

PENICILLIN-BINDING PROTEIN 4: A
PENICILLIN-BINDING PROTEIN 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PENICILLIN-BINDING PROTEIN 4

PENICILLIN-BINDING PROTEIN 4

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