SMTL ID : 3zgo.3 (2 other biounits)

Re-refined structure of the human Sirt2 apoform

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.164, C.169, C.190, C.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.164, A:C.169, A:C.190, A:C.193

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: R.122, I.144, A.145, G.146, E.148, E.317 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.122, A:R.122, A:E.317 PGE.3: 5 residues within 4Å: Chain A: H.156, V.202, F.203, F.204, E.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.203 Water bridges: A:G.205 PGE.4: 6 residues within 4Å: Chain A: R.26, L.31, F.278, S.280, K.281, A.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.26, A:K.281 PGE.5: 3 residues within 4Å: Chain A: D.29, E.30, R.38 No protein-ligand interaction detected (PLIP) PGE.6: 4 residues within 4Å: Chain A: E.180, K.181, S.184, V.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moniot, S. et al., Crystal Structure Analysis of Human Sirt2 and its Adp-Ribose Complex. J.Struct.Biol. (2013)

Release Date

2013-03-20

Peptides

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2

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