SMTL ID : 3zlz.3 (2 other biounits)

Lys6-linked tri-ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

9 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.21, K.29 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.21, A:D.21 ZN.2: 2 residues within 4Å: Chain A: T.66, H.68 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.68 ZN.3: 4 residues within 4Å: Chain A: M.1, E.16, V.17 Chain C: D.32 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.32, A:E.16, A:E.16 ZN.4: 2 residues within 4Å: Chain B: D.21, K.29 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.21, B:D.21 ZN.5: 2 residues within 4Å: Chain B: T.66, H.68 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.68 ZN.6: 4 residues within 4Å: Chain A: D.32 Chain B: M.1, E.16, V.17 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.32, B:E.16, B:E.16 ZN.7: 2 residues within 4Å: Chain C: D.21, K.29 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.21, C:D.21 ZN.8: 2 residues within 4Å: Chain C: T.66, H.68 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.68 ZN.9: 4 residues within 4Å: Chain B: D.32 Chain C: M.1, E.16, V.17 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.32, C:E.16, C:E.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hospenthal, M.K. et al., Assembly, Analysis and Architecture of Atypical Ubiquitin Chains. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-04-10

Peptides

UBIQUITIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

UBIQUITIN

Related Entries With Identical Sequence