SMTL ID : 7s6o.1

The crystal structure of Lys48-linked di-ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain B: G.10, K.11, T.12 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.12 ACT.2: 3 residues within 4Å: Chain B: P.38, D.39, D.52 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.38 Water bridges: B:K.27 Salt bridges: B:K.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wydorski, P.M. et al., Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun (2023)

Release Date

2021-09-22

Peptides

Ubiquitin: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin

Ubiquitin

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