SMTL ID : 3znj.4 (3 other biounits)

Crystal structure of unliganded ClcF from R.opacus 1CP in crystal form 1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-10-mer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: V.9, R.45, G.51, N.52 Chain B: H.87 Ligands: EDO.3 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: H.87 Chain B: V.9, R.45, G.51, N.52 Ligands: EDO.6 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: V.9, R.45, G.51, N.52 Chain D: H.87 Ligands: EDO.9 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain C: H.87 Chain D: V.9, R.45, G.51, N.52 Ligands: EDO.12 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain E: V.9, R.45, G.51, N.52 Chain F: H.87 Ligands: EDO.14 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain E: H.87 Chain F: V.9, R.45, G.51, N.52 Ligands: EDO.17 Ligand excluded by PLIP CL.19: 7 residues within 4Å: Chain G: V.9, R.45, G.51, N.52, F.73 Chain H: H.87 Ligands: EDO.21 Ligand excluded by PLIP CL.22: 7 residues within 4Å: Chain G: H.87 Chain H: V.9, R.45, Y.50, G.51, N.52 Ligands: EDO.24 Ligand excluded by PLIP CL.25: 6 residues within 4Å: Chain I: V.9, R.45, G.51, N.52 Chain J: H.87 Ligands: EDO.26 Ligand excluded by PLIP CL.28: 7 residues within 4Å: Chain I: H.87 Chain J: V.9, R.45, G.51, N.52, F.73 Ligands: EDO.29 Ligand excluded by PLIP

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain B: R.6 Ligand excluded by PLIP EDO.3: 11 residues within 4Å: Chain A: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Chain B: H.87, A.89 Ligands: CL.1 Ligand excluded by PLIP EDO.5: 9 residues within 4Å: Chain A: L.4, R.6 Chain B: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.6: 10 residues within 4Å: Chain A: H.87, A.89 Chain B: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.4 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain C: L.4, V.5, R.6, D.80, V.81, E.82 Chain D: R.6 Ligand excluded by PLIP EDO.9: 10 residues within 4Å: Chain C: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain D: H.87, A.89 Ligands: CL.7 Ligand excluded by PLIP EDO.11: 8 residues within 4Å: Chain C: R.6 Chain D: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.12: 11 residues within 4Å: Chain C: H.87, A.89 Chain D: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Ligands: CL.10 Ligand excluded by PLIP EDO.14: 11 residues within 4Å: Chain E: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Chain F: H.87, A.89 Ligands: CL.13 Ligand excluded by PLIP EDO.15: 9 residues within 4Å: Chain E: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain F: R.6 Ligands: EDO.18 Ligand excluded by PLIP EDO.17: 11 residues within 4Å: Chain E: H.87, A.89 Chain F: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Ligands: CL.16 Ligand excluded by PLIP EDO.18: 9 residues within 4Å: Chain E: R.6 Chain F: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligands: EDO.15 Ligand excluded by PLIP EDO.20: 8 residues within 4Å: Chain G: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain H: R.6 Ligand excluded by PLIP EDO.21: 10 residues within 4Å: Chain G: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain H: H.87, A.89 Ligands: CL.19 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain G: R.6 Chain H: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.24: 10 residues within 4Å: Chain G: H.87, A.89 Chain H: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.22 Ligand excluded by PLIP EDO.26: 11 residues within 4Å: Chain I: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Chain J: H.87, A.89 Ligands: CL.25 Ligand excluded by PLIP EDO.27: 9 residues within 4Å: Chain I: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain J: L.4, R.6 Ligand excluded by PLIP EDO.29: 11 residues within 4Å: Chain I: H.87, A.89 Chain J: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Ligands: CL.28 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Crystal Structure and Catalytic Mechanism of Chloromuconolactone Dehalogenase Clcf from Rhodococcus Opacus 1Cp. Mol.Microbiol. (2013)

Release Date

2013-03-06

Peptides

5-CHLOROMUCONOLACTONE DEHALOGENASE: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
P

G
R

H
S

I
T

J
U

5-CHLOROMUCONOLACTONE DEHALOGENASE

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