SMTL ID : 3znu.1

Crystal structure of ClcF in crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-10-mer

Ligands

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 8 residues within 4Å: Chain A: V.9, R.45, Y.50, G.51, N.52, F.73 Chain D: H.87 Ligands: EDO.2 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: V.9, R.45, G.51, N.52 Chain C: H.87 Ligands: EDO.7 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: M.1 Chain B: S.60, H.61, D.62 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: H.87 Chain C: V.9, R.45, G.51, N.52 Ligands: EDO.11 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: S.60, H.61, D.62 Chain G: M.1 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: H.87 Chain D: V.9, R.45, G.51, N.52 Ligands: EDO.16 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain D: S.60, H.61, D.62 Chain J: M.1 Ligand excluded by PLIP CL.19: 6 residues within 4Å: Chain E: V.9, R.45, G.51, N.52 Chain G: H.87 Ligands: EDO.21 Ligand excluded by PLIP CL.22: 6 residues within 4Å: Chain F: V.9, R.45, G.51, N.52 Chain I: H.87 Ligands: EDO.24 Ligand excluded by PLIP CL.25: 6 residues within 4Å: Chain E: H.87 Chain G: V.9, R.45, G.51, N.52 Ligands: EDO.27 Ligand excluded by PLIP CL.28: 6 residues within 4Å: Chain H: V.9, R.45, G.51, N.52 Chain J: H.87 Ligands: EDO.32 Ligand excluded by PLIP CL.29: 4 residues within 4Å: Chain F: M.1 Chain H: S.60, H.61, D.62 Ligand excluded by PLIP CL.33: 6 residues within 4Å: Chain F: H.87 Chain I: V.9, R.45, G.51, N.52 Ligands: EDO.35 Ligand excluded by PLIP CL.36: 6 residues within 4Å: Chain H: H.87 Chain J: V.9, R.45, Y.50, N.52 Ligands: EDO.38 Ligand excluded by PLIP

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 10 residues within 4Å: Chain A: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain D: H.87, A.89 Ligands: CL.1 Ligand excluded by PLIP EDO.3: 8 residues within 4Å: Chain A: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain D: R.6 Ligand excluded by PLIP EDO.6: 8 residues within 4Å: Chain B: L.4, V.5, R.6, I.53, D.80, E.82 Chain C: L.4, R.6 Ligand excluded by PLIP EDO.7: 10 residues within 4Å: Chain B: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain C: H.87, A.89 Ligands: CL.4 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain B: R.6 Chain C: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.11: 10 residues within 4Å: Chain B: H.87, A.89 Chain C: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.8 Ligand excluded by PLIP EDO.15: 9 residues within 4Å: Chain A: R.6 Chain D: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligands: MG.17 Ligand excluded by PLIP EDO.16: 10 residues within 4Å: Chain A: H.87, A.89 Chain D: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.12 Ligand excluded by PLIP EDO.18: 9 residues within 4Å: Chain A: E.82 Chain D: R.6, M.7, T.8, T.46, K.49, G.51, N.52, I.53 Ligand excluded by PLIP EDO.20: 8 residues within 4Å: Chain E: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain G: R.6 Ligand excluded by PLIP EDO.21: 10 residues within 4Å: Chain E: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain G: H.87, A.89 Ligands: CL.19 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain F: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain I: R.6 Ligand excluded by PLIP EDO.24: 10 residues within 4Å: Chain F: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain I: H.87, A.89 Ligands: CL.22 Ligand excluded by PLIP EDO.26: 8 residues within 4Å: Chain E: R.6 Chain G: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.27: 10 residues within 4Å: Chain E: H.87, A.89 Chain G: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.25 Ligand excluded by PLIP EDO.31: 8 residues within 4Å: Chain H: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Chain J: R.6 Ligand excluded by PLIP EDO.32: 10 residues within 4Å: Chain H: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Chain J: H.87, A.89 Ligands: CL.28 Ligand excluded by PLIP EDO.34: 8 residues within 4Å: Chain F: R.6 Chain I: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.35: 10 residues within 4Å: Chain F: H.87, A.89 Chain I: E.27, K.28, S.31, W.40, L.43, N.52, F.73 Ligands: CL.33 Ligand excluded by PLIP EDO.37: 9 residues within 4Å: Chain H: L.4, R.6 Chain J: L.4, V.5, R.6, I.53, D.80, V.81, E.82 Ligand excluded by PLIP EDO.38: 11 residues within 4Å: Chain H: H.87, A.89 Chain J: E.27, K.28, S.31, W.40, L.43, N.52, L.71, F.73 Ligands: CL.36 Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.14: 2 residues within 4Å: Chain D: L.11, R.13 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain D: D.80 Ligands: EDO.15 No protein-ligand interaction detected (PLIP) MG.30: 3 residues within 4Å: Chain H: L.11, R.13, E.20 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Crystal Structure and Catalytic Mechanism of Chloromuconolactone Dehalogenase Clcf from Rhodococcus Opacus 1Cp. Mol.Microbiol. (2013)

Release Date

2013-02-27

Peptides

5-CHLOROMUCONOLACTONE DEHALOGENASE: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

5-CHLOROMUCONOLACTONE DEHALOGENASE

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