SMTL ID : 3zp0.1

INFLUENZA VIRUS (VN1194) H5 HA with LSTa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-3-3-mer

Ligands

3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.1: 14 residues within 4Å: Chain A: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, N.198, E.202, L.206, Q.238, G.240 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.238, A:Y.107, A:V.147, A:S.149, A:H.195, A:Q.238, A:Q.238, A:G.240 Water bridges: A:S.149, A:S.149, A:S.149 Hydrophobic interactions: A:I.167 GAL-SIA.3: 14 residues within 4Å: Chain C: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, N.198, E.202, L.206, Q.238, G.240 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:Q.238, C:Y.107, C:V.147, C:S.149, C:H.195, C:Q.238, C:Q.238, C:G.240 Water bridges: C:S.149, C:S.149, C:S.149 Hydrophobic interactions: C:I.167 GAL-SIA.5: 14 residues within 4Å: Chain E: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, N.198, E.202, L.206, Q.238, G.240 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:Q.238, E:Y.107, E:V.147, E:S.149, E:H.195, E:Q.238, E:Q.238, E:G.240 Water bridges: E:S.149, E:S.149, E:S.149 Hydrophobic interactions: E:I.167

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 1 residues within 4Å: Chain B: E.147 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.147 NAG.4: 1 residues within 4Å: Chain D: E.147 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.147 NAG.6: 1 residues within 4Å: Chain F: E.147 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crusat, M. et al., Changes in the Hemagglutinin of H5N1 Viruses During Human Infection - Influence on Receptor Binding. Virology (2013)

Release Date

2013-10-02

Peptides

HEMAGGLUTININ: ACE
HEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
E

E
E

B
F

D
F

F
F

HEMAGGLUTININ

HEMAGGLUTININ

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