SMTL ID : 3zp3.1

INFLUENZA VIRUS (VN1194) H5 HA A138V mutant with LSTc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-3-3-mer

Ligands

3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)

SIA.1: 14 residues within 4Å: Chain A: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, E.202, K.205, L.206, Q.238 Ligands: GAL.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.167, A:L.206 Hydrogen bonds: A:V.147, A:S.149, A:S.157, A:H.195, A:K.205, A:K.205, A:Q.238, A:Q.238 SIA.5: 14 residues within 4Å: Chain C: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, E.202, K.205, L.206, Q.238 Ligands: GAL.6 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.167, C:L.206 Hydrogen bonds: C:V.147, C:S.149, C:S.157, C:H.195, C:K.205, C:K.205, C:Q.238, C:Q.238 SIA.9: 14 residues within 4Å: Chain E: Y.107, L.145, G.146, V.147, S.148, S.149, W.165, I.167, H.195, E.202, K.205, L.206, Q.238 Ligands: GAL.10 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.167, E:L.206 Hydrogen bonds: E:V.147, E:S.149, E:S.157, E:H.195, E:K.205, E:K.205, E:Q.238, E:Q.238

3 x GAL: beta-D-galactopyranose(Non-functional Binders)

GAL.2: 1 residues within 4Å: Ligands: SIA.1 No protein-ligand interaction detected (PLIP) GAL.6: 1 residues within 4Å: Ligands: SIA.5 No protein-ligand interaction detected (PLIP) GAL.10: 1 residues within 4Å: Ligands: SIA.9 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.4: 3 residues within 4Å: Chain A: Q.31, K.38, N.39 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.38 Hydrogen bonds: A:Q.31, A:N.39 Water bridges: A:N.39 NAG.7: 1 residues within 4Å: Chain C: N.27 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.27 NAG.8: 3 residues within 4Å: Chain C: Q.31, K.38, N.39 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:K.38 Hydrogen bonds: C:Q.31, C:N.39 Water bridges: C:N.39 NAG.11: 1 residues within 4Å: Chain E: N.27 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.27 NAG.12: 3 residues within 4Å: Chain E: Q.31, K.38, N.39 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:K.38 Hydrogen bonds: E:Q.31, E:N.39 Water bridges: E:N.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crusat, M. et al., Changes in the Hemagglutinin of H5N1 Viruses During Human Infection - Influence on Receptor Binding. Virology (2013)

Release Date

2013-10-02

Peptides

HAEMAGGLUTININ: ACE
HAEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
E

E
E

B
F

D
F

F
F

HAEMAGGLUTININ

HAEMAGGLUTININ

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