- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 3 residues within 4Å:- Chain A: Y.54, K.58
- Ligands: ACY.6
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.54, A:K.58
- Hydrogen bonds: A:Y.54
- Salt bridges: A:K.58, B:K.58
- Water bridges: B:V.43, B:Q.132
ACY.6: 3 residues within 4Å:- Chain B: Y.54, K.58
- Ligands: ACY.5
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Water bridges: A:V.43, A:Q.132
- Salt bridges: A:K.58, B:K.58
- Hydrophobic interactions: B:Y.54
- Hydrogen bonds: B:Y.54, B:Y.54
ACY.7: 7 residues within 4Å:- Chain A: N.139, H.140, G.152
- Chain B: G.61, R.62, W.63, P.64
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:H.140
- Water bridges: B:V.65
ACY.14: 8 residues within 4Å:- Chain A: A.60, G.61, R.62, W.63, P.64
- Chain B: N.139, H.140, G.152
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.139
- Water bridges: B:N.139, A:V.65
- Salt bridges: B:H.140
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.8: 2 residues within 4Å:- Chain A: Q.50
- Ligands: SO4.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.50
- Water bridges: A:G.49
NA.15: 2 residues within 4Å:- Chain B: Q.50
- Ligands: SO4.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.50, B:T.80
- Water bridges: B:G.49
- 2 x O2N: 5-{[(2-{[bis(4-methoxyphenyl)methyl]carbamoyl}benzyl)(prop-2-en-1-yl)amino]methyl}-1,3-benzodioxole-4-carboxylic acid(Non-covalent)
O2N.9: 16 residues within 4Å:- Chain A: D.122, Q.123, A.124, E.125, H.126, K.128, T.129
- Chain B: Q.50, A.53, Y.54, L.57, T.80, A.83, A.84, W.86, W.87
11 PLIP interactions:9 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Q.123, A:E.125, A:T.129, B:Q.50, B:A.83
- Hydrogen bonds: A:Q.123, A:E.125, A:H.126, A:T.129, A:T.129
- Salt bridges: A:H.126
O2N.16: 16 residues within 4Å:- Chain A: Q.50, A.53, Y.54, L.57, T.80, A.83, A.84, W.86, W.87
- Chain B: D.122, Q.123, A.124, E.125, H.126, K.128, T.129
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Q.123, B:E.125, B:T.129, A:Q.50, A:A.83
- Hydrogen bonds: B:Q.123, B:E.125, B:H.126, B:H.126
- Water bridges: B:E.125
- Salt bridges: B:H.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACY: ACETIC ACID(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x O2N: 5-{[(2-{[bis(4-methoxyphenyl)methyl]carbamoyl}benzyl)(prop-2-en-1-yl)amino]methyl}-1,3-benzodioxole-4-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B