- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 8 residues within 4Å:- Chain A: A.60, G.61, R.62, W.63, P.64
- Chain B: N.139, H.140, G.152
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.61
- Water bridges: B:N.139, B:H.140
EDO.12: 9 residues within 4Å:- Chain A: Y.38, N.139, H.140, G.152
- Chain B: A.60, G.61, R.62, W.63, P.64
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.61
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 5 residues within 4Å:- Chain A: G.49, Q.50, S.78, T.79, T.80
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.49, A:Q.50, A:T.79, A:T.79
GOL.13: 4 residues within 4Å:- Chain B: G.49, S.78, T.79, T.80
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.49, B:S.78, B:T.79
- Water bridges: B:Q.50
- 2 x N44: 5-({[2-(benzylcarbamoyl)benzyl](prop-2-en-1-yl)amino}methyl)-1,3-benzodioxole-4-carboxylate(Non-covalent)
N44.6: 13 residues within 4Å:- Chain A: D.122, Q.123, A.124, E.125, H.126, K.128, T.129, M.133
- Chain B: Q.50, Y.54, T.80, A.83, A.84
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:Q.50, B:Q.50, B:A.83, B:A.84
- Hydrogen bonds: A:Q.123, A:E.125, A:H.126, A:T.129
- Salt bridges: A:H.126
N44.14: 13 residues within 4Å:- Chain A: Q.50, Y.54, T.80, A.83, A.84
- Chain B: D.122, Q.123, A.124, E.125, H.126, K.128, T.129, M.133
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:A.83, A:A.84
- Hydrogen bonds: B:Q.123, B:E.125, B:H.126, B:H.126
- Salt bridges: B:H.126
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 3 residues within 4Å:- Chain B: Y.54, K.58
- Ligands: ACT.11
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Water bridges: A:V.43, A:Q.132
- Salt bridges: A:K.58, A:K.128, B:K.58
- Hydrophobic interactions: B:Y.54
- Hydrogen bonds: B:Y.54, B:Y.54
ACT.11: 4 residues within 4Å:- Chain A: E.42, Y.54, K.58
- Ligands: ACT.10
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Water bridges: B:V.43, B:Q.132
- Salt bridges: B:K.58, B:K.128, A:K.58
- Hydrophobic interactions: A:Y.54
- Hydrogen bonds: A:Y.54
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x N44: 5-({[2-(benzylcarbamoyl)benzyl](prop-2-en-1-yl)amino}methyl)-1,3-benzodioxole-4-carboxylate(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B