- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.4: 8 residues within 4Å:- Chain A: E.40, A.41, E.42, F.55, K.58, L.59, R.62
- Chain B: R.62
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.55, A:K.58
- Hydrogen bonds: A:E.42, A:R.62
- Salt bridges: A:K.58, B:R.62
ACY.11: 7 residues within 4Å:- Chain A: R.62
- Chain B: E.40, A.41, E.42, F.55, K.58, L.59
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.55, B:K.58
- Hydrogen bonds: B:E.40, B:A.41
- Salt bridges: B:K.58, A:R.62
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ZT2: 5-[(E)-(2-OXO-2,3-DIHYDRO-1H-INDEN-1-YLIDENE)METHYL]-1,3-BENZODIOXOLE-4-CARBOXYLIC ACID(Non-covalent)
ZT2.6: 13 residues within 4Å:- Chain A: Q.123, A.124, E.125, H.126, K.128, T.129, M.133
- Chain B: Q.50, Y.54, L.57, T.80, A.84, W.87
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:E.125, A:H.126, A:H.126, A:T.129
- Salt bridges: A:H.126
- Hydrophobic interactions: B:Q.50, B:L.57, B:T.80, B:A.84, B:W.87
ZT2.7: 14 residues within 4Å:- Chain A: Y.38, N.139, H.140, R.142, S.150, G.152, E.153, V.156
- Chain B: G.61, R.62, W.63, P.64, I.159, I.163
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.38, A:N.139, A:H.140, A:E.153, A:V.156, B:P.64
- Hydrogen bonds: A:R.142, A:E.153, A:E.153
- pi-Stacking: A:H.140, A:H.140
ZT2.12: 12 residues within 4Å:- Chain A: Q.50, Y.54, L.57, T.80, A.84, W.87
- Chain B: Q.123, A.124, E.125, H.126, T.129, M.133
12 PLIP interactions:5 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:Q.50, A:L.57, A:T.80, A:A.84, A:W.87, B:T.129
- Hydrogen bonds: B:E.125, B:H.126, B:T.129, B:T.129
- Water bridges: B:K.128
- Salt bridges: B:H.126
ZT2.13: 13 residues within 4Å:- Chain A: G.61, R.62, W.63, P.64, I.159, I.163
- Chain B: Y.38, H.140, R.142, S.150, G.152, E.153, V.156
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.38, B:H.140, B:E.153, B:V.156
- Hydrogen bonds: B:R.142
- pi-Stacking: B:H.140, B:H.140
- Water bridges: A:D.162
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-18
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ZT2: 5-[(E)-(2-OXO-2,3-DIHYDRO-1H-INDEN-1-YLIDENE)METHYL]-1,3-BENZODIOXOLE-4-CARBOXYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-18
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B