SMTL ID : 3zwp.1 (3 other biounits)

Crystal structure of ADP ribosyl cyclase complexed with ara-2'F-ADP- ribose at 2.1 angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x AVU: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4R)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate(Covalent)

AVU.1: 14 residues within 4Å: Chain A: F.78, W.79, S.80, G.81, L.99, E.100, N.109, W.142, S.146, R.172, S.175, F.176, F.177, E.181 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:W.79, A:G.81, A:E.100, A:N.109, A:S.146, A:R.172, A:S.175, A:F.176, A:F.177 Water bridges: A:R.172 pi-Stacking: A:W.142, A:W.142, A:W.142 AVU.2: 14 residues within 4Å: Chain B: F.78, W.79, S.80, G.81, Y.83, L.99, N.109, S.110, S.146, R.172, S.175, F.176, F.177, E.181 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:W.79, B:G.81, B:N.109, B:S.110, B:S.146, B:R.172, B:S.175, B:F.176, B:F.177 Water bridges: B:S.110, B:S.110 pi-Stacking: B:Y.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotaka, M. et al., Structural Studies of Intermediates Along the Cyclization Pathway of Aplysia Adp-Ribosyl Cyclase. J.Mol.Biol. (2012)

Release Date

2011-11-30

Peptides

ADP-RIBOSYL CYCLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-RIBOSYL CYCLASE

Related Entries With Identical Sequence