SMTL ID : 3zwy.1 (3 other biounits)

Crystal structure of ADP-ribosyl cyclase complexed with 8-bromo-ADP- ribose and cyclic 8-bromo-cyclic-ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x AV1: [(2R,3S,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate(Non-covalent)

AV1.1: 14 residues within 4Å: Chain A: F.78, W.79, S.80, G.81, Y.83, L.99, N.109, S.110, S.146, R.172, S.175, F.176, F.177, E.181 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:W.79, A:W.79, A:G.81, A:N.109, A:S.146, A:R.172, A:S.175, A:F.176, A:F.177 pi-Stacking: A:Y.83, A:Y.83

1 x CV1: (2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8 ,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide(Non-covalent)

CV1.2: 13 residues within 4Å: Chain B: F.78, W.79, S.80, G.81, L.99, E.100, N.109, S.110, W.142, S.146, S.175, F.176, E.181 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:W.79, B:S.80, B:G.81, B:E.100, B:E.100, B:S.146, B:F.176 Water bridges: B:M.77, B:L.99 pi-Stacking: B:W.142, B:W.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotaka, M. et al., Structural Studies of Intermediates Along the Cyclization Pathway of Aplysia Adp-Ribosyl Cyclase. To be Published

Release Date

2012-08-22

Peptides

ADP-RIBOSYL CYCLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ADP-RIBOSYL CYCLASE

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