SMTL ID : 3zx0.2 (1 other biounit)

NTPDase1 in complex with Heptamolybdate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x MO7: bis(mu4-oxo)-bis(mu3-oxo)-octakis(mu2-oxo)-dodecaoxo-heptamolybdenum (VI)(Non-covalent)

MO7.1: 3 residues within 4Å: Chain A: K.381, E.382, K.383 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.381, A:K.383, A:K.383 MO7.22: 3 residues within 4Å: Chain B: K.381, E.382, K.383 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.381, B:K.381, B:E.382, B:K.383, B:K.383

13 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: G.189, G.190, S.191, S.192 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: S.43, G.190, D.233, Q.234 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: G.42, S.43, G.76, I.77, S.78, G.119, M.120 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: Y.377, P.378, T.379, V.380 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: A.206, P.207, E.208 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: G.189, G.190, S.191, S.192 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: S.43, G.190, S.191, D.233, Q.234 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain B: G.42, S.43, G.76, I.77, S.78, G.119 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: Y.377, P.378, T.379 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain A: P.207 Chain B: R.121, R.124, T.156 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: A.206, P.207, E.208 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: P.259, G.260, P.369, W.370, E.371 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain B: G.329 Ligand excluded by PLIP

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.7: 6 residues within 4Å: Chain A: M.341, F.344, M.358, T.362, G.392, L.396 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.362 ACY.8: 8 residues within 4Å: Chain A: L.304, F.307, N.309, F.319, S.397, L.398, Q.401, G.402 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.307 Hydrogen bonds: A:N.309 ACY.19: 6 residues within 4Å: Chain B: M.341, F.344, M.358, T.362, G.392, L.396 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.344 ACY.20: 8 residues within 4Å: Chain B: L.304, F.307, N.309, A.318, F.319, S.397, Q.401, G.402 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.307, B:Q.401 Hydrogen bonds: B:N.309, B:A.318

3 x NA: SODIUM ION(Non-functional Binders)

NA.9: 2 residues within 4Å: Chain A: L.304, F.307 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.307 NA.10: 5 residues within 4Å: Chain A: C.317, A.318, Q.401, G.402, N.404 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.402, A:N.404 NA.21: 5 residues within 4Å: Chain B: C.317, A.318, Q.401, G.402, N.404 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.318, B:N.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Crystallographic evidence for a domain motion in rat nucleoside triphosphate diphosphohydrolase (NTPDase) 1. J. Mol. Biol. (2012)

Release Date

2011-11-30

Peptides

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 1

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