SMTL ID : 3zxg.1 (1 other biounit)

lysenin sphingomyelin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.168, G.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.296 Salt bridges: A:R.168 SO4.2: 3 residues within 4Å: Chain A: W.186, Y.224, Y.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.224

1 x 0SM: TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM(Non-covalent)

0SM.3: 11 residues within 4Å: Chain A: K.20, G.22, Y.23, V.24, Y.25, E.26, R.28, G.29, S.30, I.37, E.127 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.25, A:Y.25, A:R.28 Hydrogen bonds: A:V.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., Structures of Lysenin Reveal a Shared Evolutionary Origin for Pore-Forming Proteins and its Mode of Sphingomyelin Recognition. Structure (2012)

Release Date

2012-09-19

Peptides

LYSENIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSENIN

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