SMTL ID : 3zxi.1

Crystal structure of human mitochondrial tyrosyl-tRNA synthetase in complex with a tyrosyl-adenylate analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x TYA: PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER(Non-covalent)

TYA.1: 24 residues within 4Å: Chain A: Y.50, C.51, G.52, F.53, D.54, H.61, G.63, H.64, A.67, L.84, T.89, D.94, N.146, Y.194, Q.198, D.201, Q.214, G.216, G.217, D.219, Q.220, P.245, L.246, I.247 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.198 Hydrogen bonds: A:D.54, A:H.64, A:Y.194, A:Q.198, A:D.201, A:G.217, A:D.219, A:Q.220, A:Q.220, A:I.247, A:I.247 Salt bridges: A:H.64 TYA.2: 24 residues within 4Å: Chain B: Y.50, C.51, G.52, F.53, D.54, H.61, G.63, H.64, A.67, L.84, T.89, D.94, N.146, Y.194, Q.198, D.201, Q.214, G.216, G.217, D.219, Q.220, P.245, L.246, I.247 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Q.198 Hydrogen bonds: B:Y.50, B:G.52, B:D.54, B:D.94, B:Q.198, B:Q.198, B:D.201, B:D.201, B:G.217, B:D.219, B:Q.220, B:N.223, B:I.247, B:I.247 Salt bridges: B:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Exploiting Protein Engineering and Crystal Polymorphism for Successful X-Ray Structure Determination. Cryst.Growth Des. (2011)

Release Date

2011-11-16

Peptides

TYROSYL-TRNA SYNTHETASE, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TYROSYL-TRNA SYNTHETASE, MITOCHONDRIAL

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