SMTL ID : 3zyi.1

NetrinG2 in complex with NGL2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: D.361, N.363 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.363 NAG.4: 6 residues within 4Å: Chain B: E.55, P.56, E.120, N.122, R.253, R.255 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.255

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: H.298, H.299, G.327, R.328, H.330 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.299, A:R.328 Salt bridges: A:H.299, A:R.328, A:H.330 PO4.3: 3 residues within 4Å: Chain A: M.335, R.338, S.347 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.347, A:S.347, A:S.347 Salt bridges: A:R.338

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain B: L.94, D.97, E.99, T.105, S.279 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:L.94, B:E.99, B:T.105, B:T.105, B:S.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seiradake, E. et al., Structural Basis for Cell Surface Patterning Through Netring-Ngl Interactions. Embo J. (2011)

Release Date

2011-10-05

Peptides

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4: A
NETRIN-G2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4

NETRIN-G2

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