SMTL ID : 3zyj.1 (1 other biounit)

NetrinG1 in complex with NGL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.1: 2 residues within 4Å: Chain A: Q.244, N.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.244, A:N.266 NAG.2: 7 residues within 4Å: Chain B: D.66, P.67, Q.131, N.133, R.263, R.265 Ligands: NAG.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.66, B:Q.131, B:N.133, B:R.263, B:R.265, B:R.265 NAG.3: 5 residues within 4Å: Chain B: W.45, Y.47, H.319, N.320, Y.333 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.47, B:H.319, B:N.320 NAG.4: 1 residues within 4Å: Ligands: NAG.2 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain B: L.105, D.108, E.110, T.116, S.289, D.290 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:L.105, B:T.116, B:T.116, B:S.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seiradake, E. et al., Structural Basis for Cell Surface Patterning Through Netring-Ngl Interactions. Embo J. (2011)

Release Date

2011-10-05

Peptides

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C: A
NETRIN-G1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C

NETRIN-G1

Related Entries With Identical Sequence