SMTL ID : 3zyj.2 (1 other biounit)

NetrinG1 in complex with NGL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.1: 3 residues within 4Å: Chain A: Q.244, N.266, T.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.244, A:N.266 NAG.2: 4 residues within 4Å: Chain B: W.45, Y.47, N.320, Y.333 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.320, B:N.320 NAG.3: 7 residues within 4Å: Chain B: D.66, P.67, Q.131, N.133, R.263, R.265 Ligands: NAG.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.133, B:R.265 NAG.4: 3 residues within 4Å: Ligands: NAG.3, BMA.5, MAN.6 No protein-ligand interaction detected (PLIP)

1 x BMA: beta-D-mannopyranose(Non-functional Binders)

BMA.5: 2 residues within 4Å: Ligands: NAG.4, MAN.6 No protein-ligand interaction detected (PLIP)

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.6: 2 residues within 4Å: Ligands: NAG.4, BMA.5 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.7: 6 residues within 4Å: Chain B: L.105, D.108, E.110, T.116, S.289, D.290 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:L.105, B:E.110, B:T.116, B:T.116, B:D.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seiradake, E. et al., Structural Basis for Cell Surface Patterning Through Netring-Ngl Interactions. Embo J. (2011)

Release Date

2011-10-05

Peptides

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C: A
NETRIN-G1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C

NETRIN-G1

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