SMTL ID : 4a6u.1

Crystal structure of the omega transaminase from Chromobacterium violaceum in the apo form, crystallised from PEG 3350

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 8 residues within 4Å: Chain A: M.36, G.39, Y.66, G.67, Y.294 Chain B: L.82, P.83, F.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.67, A:Y.294 Water bridges: A:K.69 SCN.2: 4 residues within 4Å: Chain A: L.59, C.61, K.288 Chain B: F.84 No protein-ligand interaction detected (PLIP) SCN.4: 8 residues within 4Å: Chain A: L.82, P.83, F.84 Chain B: M.36, G.39, Y.66, G.67, Y.294 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.67, B:Y.294 Water bridges: B:K.69

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: A.104, T.107, P.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.104, A:T.107 Water bridges: A:F.111 NA.5: 4 residues within 4Å: Chain B: A.104, T.107, P.108, A.109 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.107, B:T.107, B:T.107 Water bridges: B:F.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svedendahl Humble, M. et al., Crystal Structures of the Chromobacterium Violaceum Omega-Transaminase Reveal Major Structural Rearrangements Upon Binding of Coenzyme Plp. FEBS J. (2012)

Release Date

2012-01-25

Peptides

OMEGA TRANSAMINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

OMEGA TRANSAMINASE

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