SMTL ID : 4a85.1

Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with kinetin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x H35: N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE(Non-covalent)

H35.1: 12 residues within 4Å: Chain A: F.22, I.23, F.30, Y.83, I.102, I.116, N.118, S.136, K.137, G.140 Ligands: MPD.9, MPD.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.22, A:I.23, A:I.102 Hydrogen bonds: A:N.118

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.6, T.7, E.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.7, A:T.7, A:E.8 SO4.3: 2 residues within 4Å: Chain A: R.70, K.97 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.84 Salt bridges: A:R.70, A:K.97 SO4.4: 4 residues within 4Å: Chain A: S.149, Y.150, A.153, H.154 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.150 Salt bridges: A:H.154 SO4.5: 4 residues within 4Å: Chain A: K.97, S.99, K.119, H.121 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.99, A:S.99 Water bridges: A:K.97, A:E.101 Salt bridges: A:K.97, A:H.121 SO4.6: 3 residues within 4Å: Chain A: Q.36, A.37, F.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.36, A:Q.36 Water bridges: A:T.142

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 9 residues within 4Å: Chain A: I.23, L.24, D.27, G.48, K.54, V.71, V.74, Y.81 Ligands: MPD.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.24, A:K.54 Water bridges: A:I.23, A:G.26, A:D.27, A:G.48

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.8: 8 residues within 4Å: Chain A: F.58, F.64, V.67, P.90, A.135, S.136, M.139 Ligands: MPD.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.58, A:F.64, A:V.67, A:M.139 Water bridges: A:Q.132 MPD.9: 6 residues within 4Å: Chain A: V.67, D.69, Y.83, S.136 Ligands: H35.1, MPD.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.100, A:S.136 MPD.10: 10 residues within 4Å: Chain A: G.26, D.27, F.30, V.41, K.54, D.69, Y.81, Y.83 Ligands: H35.1, TRS.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.30, A:F.30, A:V.41, A:K.54, A:Y.81, A:Y.83 Hydrogen bonds: A:D.27, A:K.54 Water bridges: A:G.26, A:D.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kofler, S. et al., Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1. J.Mol.Biol. (2012)

Release Date

2012-05-30

Peptides

MAJOR POLLEN ALLERGEN BET V 1-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR POLLEN ALLERGEN BET V 1-A

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