SMTL ID : 4a99.1 (3 other biounits)

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH MINOCYCLINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: I.32, G.33, G.34, G.35, P.36, V.37, Y.55, E.56, R.57, D.58, T.69, L.70, R.127, R.131, R.147, K.148, L.149, A.177, N.178, G.179, Q.202, L.297, G.320, D.321, P.328, G.331, G.333, V.334 Ligands: MIY.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Q.202, A:L.297 Hydrogen bonds: A:G.34, A:G.34, A:V.37, A:R.57, A:R.57, A:D.58, A:R.127, A:R.127, A:R.131, A:L.149, A:L.149, A:N.178, A:D.321, A:G.333, A:V.334 Water bridges: A:G.35, A:G.38, A:D.71, A:D.71, A:G.180, A:D.321, A:D.321, A:D.321, A:A.322, A:A.322, A:G.331, A:Q.332, A:N.335 pi-Cation interactions: A:R.127

2 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)

MIY.2: 17 residues within 4Å: Chain A: Q.202, R.223, M.225, F.234, A.235, N.236, H.244, F.245, G.246, S.248, P.328, F.329, A.330, G.331, M.385, F.392 Ligands: FAD.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.234, A:F.234, A:F.234 Hydrogen bonds: A:Q.202, A:R.223, A:H.244 Water bridges: A:T.69, A:T.69, A:T.69, A:T.69, A:D.71, A:N.200, A:R.223, A:N.236, A:N.236 MIY.3: 5 residues within 4Å: Chain A: K.82, L.87, Q.88, Y.91, F.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.82, A:K.82, A:Q.88

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.147, K.166 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.147, A:K.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkers, G. et al., Putative Dioxygen-Binding Sites and Recognition of Tigecycline and Minocycline in the Tetracycline-Degrading Monooxygenase Tetx. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-12-12

Peptides

TETX2 PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TETX2 PROTEIN

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