SMTL ID : 4a9x.1

Pseudomonas fluorescens PhoX in complex with the substrate analogue AppCp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: P.154, A.266, D.320, H.321, G.322, Q.364, L.368 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.322, A:Q.364 Water bridges: A:D.320 EDO.2: 1 residues within 4Å: Chain A: K.423 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.423

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.3: 16 residues within 4Å: Chain A: E.90, E.194, N.195, R.223, D.292, E.293, R.294, R.385, E.387, D.479, D.494, E.532 Ligands: CA.4, CA.5, CA.6, FEO.7 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:E.194, A:N.195, A:R.223, A:D.292, A:R.294, A:R.294, A:R.385, A:R.385, A:D.494 Water bridges: A:N.195, A:R.223, A:R.223, A:R.223 Salt bridges: A:R.385 pi-Cation interactions: A:R.223

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 8 residues within 4Å: Chain A: C.179, E.273, E.387, W.388, D.479 Ligands: ACP.3, CA.5, FEO.7 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:E.273, A:D.479, H2O.5, H2O.5, FEO.7 CA.5: 8 residues within 4Å: Chain A: R.385, E.387, T.403, D.479, D.494 Ligands: ACP.3, CA.4, CA.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.387, A:E.387, A:D.479, A:D.494, H2O.16 CA.6: 5 residues within 4Å: Chain A: D.494, E.532, H.551 Ligands: ACP.3, CA.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.494, A:E.532, H2O.5, H2O.6, H2O.19

1 x FEO: MU-OXO-DIIRON(Non-covalent)

FEO.7: 10 residues within 4Å: Chain A: D.69, E.90, C.179, E.194, E.273, D.292, R.385, E.387 Ligands: ACP.3, CA.4 9 PLIP interactions: 8 interactions with chain A, 1 Ligand-Water interactions, Water bridges: A:W.388 Metal complexes: A:E.90, A:C.179, A:E.194, A:E.194, A:E.273, A:D.292, A:E.387, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yong, S.C. et al., A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry. Science (2014)

Release Date

2012-12-05

Peptides

PHOX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOX

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