SMTL ID : 4abv.1

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x FT2: 5-(chloromethyl)-2-(2,4-dichlorophenoxy)phenol(Non-covalent)

FT2.1: 11 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: T.106, A.108 Ligands: FT2.3 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:K.15, A:A.108, A:L.110, C:T.106, C:A.108 Halogen bonds: A:T.119 FT2.2: 13 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, T.119 Ligands: FT2.4 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:K.15, D:L.17, D:A.108, B:L.17, B:A.108, B:L.110 FT2.3: 11 residues within 4Å: Chain A: T.106, A.108 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: FT2.1 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:K.15, C:A.108, C:L.110, A:T.106, A:A.108 Halogen bonds: C:T.119 FT2.4: 13 residues within 4Å: Chain B: K.15, L.17, A.108, T.119 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: FT2.2 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, D:L.110, B:K.15, B:L.17, B:A.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomar, D. et al., Crystallographic Study of Novel Transthyretin Ligands Exhibiting Negative-Cooperativity between Two Thyroxine Binding Sites. Plos One (2012)

Release Date

2012-09-26

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

Related Entries With Identical Sequence