SMTL ID : 4ac2.1

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-tetramer

Ligands

4 x 43F: 2,4-DICHLORO-1-[4-(CHLOROMETHYL)-2-METHOXYPHENOXY]BENZENE(Non-covalent)

43F.1: 13 residues within 4Å: Chain A: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, A.108, A.109, L.110 Ligands: 43F.3 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.17, A:A.108, A:A.108, A:L.110, C:K.15, C:L.17 Halogen bonds: A:T.119 43F.2: 15 residues within 4Å: Chain B: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: 43F.4 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:K.15, D:L.17, B:L.17, B:A.108, B:A.108, B:L.110 43F.3: 13 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110 Chain C: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: 43F.1 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, C:A.108, C:L.110, A:K.15, A:L.17 Halogen bonds: C:T.119 43F.4: 15 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain D: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: 43F.2 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, D:A.108, D:L.110, B:K.15, B:L.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomar, D. et al., Crystallographic Study of Novel Transthyretin Ligands Exhibiting Negative-Cooperativity between Two Thyroxine Binding Sites. Plos One (2012)

Release Date

2012-09-26

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

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