SMTL ID : 4ae2.1

Crystal structure of Human fibrillar procollagen type III C- propeptide trimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.70, A:Q.73, A:C.75, A:D.78, H2O.2 CA.4: 5 residues within 4Å: Chain B: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.70, B:Q.73, B:C.75, B:D.78, H2O.1 CA.7: 5 residues within 4Å: Chain C: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.70, C:Q.73, C:C.75, C:D.78, H2O.7

5 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 7 residues within 4Å: Chain A: P.41, A.49, D.54, L.55, C.58, H.59 Chain B: C.75 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:P.41, A:H.59 Water bridges: B:C.75, B:C.75 NO3.3: 9 residues within 4Å: Chain A: K.103, H.104, W.105, W.106, I.239, G.240, Q.244, E.245, F.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.105, A:W.106, A:G.240, A:Q.244, A:F.246 NO3.5: 9 residues within 4Å: Chain B: K.103, H.104, W.105, W.106, I.239, G.240, Q.244, E.245, F.246 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.103, B:H.104, B:W.105, B:W.106, B:G.240, B:F.246 NO3.6: 7 residues within 4Å: Chain B: P.41, A.49, D.54, L.55, C.58, H.59 Chain C: C.75 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Water bridges: C:C.75, B:R.50 Hydrogen bonds: B:H.59 NO3.8: 8 residues within 4Å: Chain A: C.75 Chain C: S.40, P.41, A.49, D.54, L.55, C.58, H.59 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.40, C:D.54, C:H.59 Water bridges: C:D.54, A:C.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bourhis, J.M. et al., Structural Basis of Fibrillar Collagen Trimerization and Related Genetic Disorders. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-09-12

Peptides

COLLAGEN ALPHA-1(III) CHAIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

COLLAGEN ALPHA-1(III) CHAIN

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