SMTL ID : 4aej.1

Crystal structure of Human fibrillar procollagen type III C- propeptide trimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.70, A:Q.73, A:C.75, A:D.78, H2O.1 CA.7: 5 residues within 4Å: Chain B: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.70, B:Q.73, B:C.75, B:D.78, H2O.4 CA.10: 5 residues within 4Å: Chain C: D.70, N.72, Q.73, C.75, D.78 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.70, C:Q.73, C:C.75, C:D.78, H2O.1

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.83, N.85, E.90, C.92, C.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.85 GOL.3: 3 residues within 4Å: Chain A: K.63, S.64, M.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.64, A:S.64 Water bridges: A:S.64, A:E.87 GOL.4: 5 residues within 4Å: Chain A: L.203, E.204, V.218 Ligands: GOL.5, GOL.6 No protein-ligand interaction detected (PLIP) GOL.5: 3 residues within 4Å: Chain A: E.204, K.216 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.204, A:K.216 GOL.6: 2 residues within 4Å: Chain A: L.203 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.203 GOL.8: 6 residues within 4Å: Chain B: S.129, Y.130, E.137, L.140, D.141, L.144 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.130, B:D.141 GOL.9: 6 residues within 4Å: Chain B: H.115, K.181, K.191, A.192, E.193, G.194 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.115, B:A.192, B:E.193, B:E.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bourhis, J.M. et al., Structural Basis of Fibrillar Collagen Trimerization and Related Genetic Disorders. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-09-12

Peptides

COLLAGEN ALPHA-1(III) CHAIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

COLLAGEN ALPHA-1(III) CHAIN

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