SMTL ID : 4agc.1

CRYSTAL STRUCTURE OF VEGFR2 (JUXTAMEMBRANE AND KINASE DOMAINS) IN COMPLEX WITH AXITINIB (AG-013736) (N-Methyl-2-(3-((E)-2-pyridin-2-yl- vinyl)-1H-indazol-6-ylsulfanyl)-benzamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AXI: AXITINIB(Non-covalent)

AXI.1: 19 residues within 4Å: Chain A: I.36, L.72, V.80, A.98, K.100, E.117, L.121, V.131, V.146, V.148, E.149, F.150, C.151, K.152, G.154, L.217, C.227, D.228, F.229 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.72, A:V.80, A:K.100, A:V.148, A:V.148, A:L.217 Hydrogen bonds: A:E.117, A:E.149, A:C.151, A:D.228 Water bridges: A:N.155 pi-Stacking: A:F.229 pi-Cation interactions: A:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mctigue, M. et al., Molecular Conformations, Interactions, and Properties Associated with Drug Efficiency and Clinical Performance Among Vegfr Tk Inhibitors. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2

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