SMTL ID : 4agd.1

CRYSTAL STRUCTURE OF VEGFR2 (JUXTAMEMBRANE AND KINASE DOMAINS) IN COMPLEX WITH SUNITINIB (SU11248) (N-2-diethylaminoethyl)-5-((Z)-(5- fluoro-2-oxo-1H-indol-3-ylidene)methyl)-2,4-dimethyl-1H-pyrrole-3- carboxamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 14 residues within 4Å: Chain A: L.72, A.98, K.100, V.131, V.148, E.149, F.150, C.151, K.152, G.154, L.217, C.227, D.228, F.229 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.72, A:V.131, A:V.148, A:F.150, A:L.217 Hydrogen bonds: A:E.149, A:C.151, A:C.151 pi-Stacking: A:F.229 Halogen bonds: A:D.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mctigue, M. et al., Molecular Conformations, Interactions, and Properties Associated with Drug Efficiency and Clinical Performance Among Vegfr Tk Inhibitors. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2

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