- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 52C: 5-(2-CHLOROPHENYL)-1H-TETRAZOLE(Non-covalent)
52C.2: 10 residues within 4Å:- Chain A: V.25, V.50, D.51, V.52, Y.82, A.95, I.115, F.118, I.119, N.122
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.52, A:A.95, A:I.115, A:I.119
- Hydrogen bonds: A:Y.82, A:N.122
52C.6: 10 residues within 4Å:- Chain B: V.25, V.50, D.51, V.52, Y.82, A.95, I.115, F.118, I.119, N.122
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.52, B:A.95, B:I.115, B:I.119
- Hydrogen bonds: B:Y.82, B:N.122
52C.10: 10 residues within 4Å:- Chain C: V.25, V.50, D.51, V.52, Y.82, A.95, I.115, F.118, I.119, N.122
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:V.52, C:A.95, C:I.115, C:I.119
- Hydrogen bonds: C:N.122
52C.13: 9 residues within 4Å:- Chain D: V.25, D.51, V.52, Y.82, A.95, I.115, F.118, I.119, N.122
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:V.52, D:V.52, D:A.95, D:I.115, D:I.119
- Hydrogen bonds: D:N.122
- 8 x MLI: MALONATE ION(Non-functional Binders)
MLI.3: 8 residues within 4Å:- Chain A: R.105, N.137, L.164, R.168, H.192, A.237, T.247, I.251
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.164, A:I.251
- Hydrogen bonds: A:N.137, A:T.247
- Water bridges: A:T.247
- Salt bridges: A:R.105, A:R.105, A:R.168, A:H.192, A:H.192
MLI.4: 6 residues within 4Å:- Chain A: R.170, H.185, W.187, V.269
- Chain D: S.183, H.185
8 PLIP interactions:4 interactions with chain D, 4 interactions with chain A- Water bridges: D:L.182, D:A.206, A:R.170, A:V.269
- Salt bridges: D:H.185, D:H.185, A:R.170, A:H.185
MLI.7: 8 residues within 4Å:- Chain B: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:Q.99, B:N.137, B:T.247, B:T.247
- Water bridges: B:T.247, B:T.247
- Salt bridges: B:R.105, B:R.105, B:R.168, B:H.192, B:H.192
MLI.8: 6 residues within 4Å:- Chain B: R.170, H.185, W.187, V.269
- Chain C: S.183, H.185
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain C- Water bridges: B:R.170, B:V.269, C:S.183, C:A.206
- Salt bridges: B:R.170, B:H.185, C:H.185, C:H.185
MLI.11: 8 residues within 4Å:- Chain C: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:Q.99, C:N.137, C:T.247
- Water bridges: C:T.247, C:T.247, C:T.247
- Salt bridges: C:R.105, C:R.105, C:R.168, C:H.192, C:H.192
MLI.12: 7 residues within 4Å:- Chain B: L.182, S.183, H.185
- Chain C: R.170, H.185, W.187, V.269
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain C- Water bridges: B:L.182, B:S.183, C:R.170, C:H.185, C:V.269
- Salt bridges: B:H.185, B:H.185, C:R.170, C:H.185
MLI.14: 8 residues within 4Å:- Chain D: R.105, N.137, L.164, R.168, H.192, A.237, T.247, I.251
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.164, D:I.251
- Hydrogen bonds: D:N.137, D:T.247
- Water bridges: D:T.247
- Salt bridges: D:R.105, D:R.105, D:R.168, D:H.192, D:H.192
MLI.15: 6 residues within 4Å:- Chain A: S.183, H.185
- Chain D: R.170, H.185, W.187, V.269
9 PLIP interactions:5 interactions with chain D, 4 interactions with chain A- Water bridges: D:R.170, D:H.185, D:V.269, A:L.182, A:S.183
- Salt bridges: D:R.170, D:H.185, A:H.185, A:H.185
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 52C: 5-(2-CHLOROPHENYL)-1H-TETRAZOLE(Non-covalent)
- 8 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D