- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x MLI: MALONATE ION(Non-functional Binders)
- 4 x 88S: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)-3-UREIDO-PROPANAMIDE(Non-covalent)
88S.3: 11 residues within 4Å:- Chain A: G.26, G.28, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.52, A:V.52, A:A.95, A:F.118
- Hydrogen bonds: A:D.51, A:G.96, A:G.96, A:G.96
- Water bridges: A:G.28, A:A.29, A:V.30
88S.5: 12 residues within 4Å:- Chain B: G.26, G.28, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119
- Ligands: 2B4.6
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:V.52, B:V.52, B:A.95, B:F.118, B:I.119
- Hydrogen bonds: B:G.28, B:D.51, B:G.96, B:G.96, B:G.96
- Water bridges: B:A.29, B:V.30, B:V.30, B:Y.82, B:R.98, B:R.98
88S.9: 11 residues within 4Å:- Chain C: G.26, G.28, D.51, V.52, T.94, A.95, G.96, I.115, F.118, I.119
- Ligands: 2B4.10
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:V.52, C:A.95, C:F.118, C:I.119
- Hydrogen bonds: C:D.51, C:G.96, C:G.96, C:G.96
- Water bridges: C:G.28, C:A.29, C:V.30
88S.15: 11 residues within 4Å:- Chain D: G.26, G.28, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:V.52, D:V.52, D:A.95, D:F.118, D:I.119
- Hydrogen bonds: D:G.28, D:D.51, D:G.96, D:G.96, D:G.96
- Water bridges: D:A.29, D:V.30, D:G.31, D:N.112
- 2 x 2B4: 2-(4-BROMANYLPHENOXY)PROPANEDIOIC ACID(Non-covalent)
2B4.6: 14 residues within 4Å:- Chain B: V.30, T.94, Q.99, R.105, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251
- Ligands: 88S.5
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:V.30, B:V.135, B:I.251
- Hydrogen bonds: B:Q.99, B:N.137, B:T.247
- Water bridges: B:N.137
- Salt bridges: B:R.105, B:R.105, B:R.168, B:H.192, B:H.192
- Halogen bonds: B:T.94
2B4.10: 15 residues within 4Å:- Chain C: V.30, T.94, Q.99, R.105, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251
- Ligands: 88S.9, MLI.11
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:V.30, C:V.30, C:V.135, C:I.251
- Hydrogen bonds: C:Q.99, C:N.137, C:T.247
- Water bridges: C:T.247, C:I.251
- Salt bridges: C:R.105, C:R.105, C:R.168, C:H.192, C:H.192
- Halogen bonds: C:T.94
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 10 residues within 4Å:- Chain B: S.201, G.202, N.204, G.207
- Chain C: S.201, G.202, V.203, N.204, G.207, S.209
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:G.202, B:G.202, B:N.204
- Water bridges: C:L.210
GOL.12: 7 residues within 4Å:- Chain C: K.41
- Chain D: L.39, M.40, D.42, F.70, L.71, K.72
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.72
- Water bridges: D:L.39, D:D.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x MLI: MALONATE ION(Non-functional Binders)
- 4 x 88S: N-(2-METHYL-1,3-BENZOTHIAZOL-6-YL)-3-UREIDO-PROPANAMIDE(Non-covalent)
- 2 x 2B4: 2-(4-BROMANYLPHENOXY)PROPANEDIOIC ACID(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D