SMTL ID : 4aji.1

rat LDHA in complex with 2-((3,4-dimethoxyphenyl)methyl))propanedioic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

4 x 88R: 2-((3,4-DIMETHOXYPHENYL)METHYL))PROPANEDIOIC ACID(Non-covalent)

88R.1: 14 residues within 4Å: Chain A: V.30, T.94, R.98, Q.99, R.105, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.30, A:V.135, A:I.251 Hydrogen bonds: A:Q.99, A:R.105, A:N.137, A:T.247 Water bridges: A:Q.99, A:Q.99, A:T.247 Salt bridges: A:R.105, A:R.168, A:H.192 88R.2: 14 residues within 4Å: Chain B: V.30, T.94, R.98, Q.99, R.105, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.30, B:V.135, B:I.251 Hydrogen bonds: B:Q.99, B:N.137, B:T.247, B:T.247 Water bridges: B:Q.99 Salt bridges: B:R.105, B:R.105, B:R.168, B:H.192, B:H.192 88R.3: 14 residues within 4Å: Chain C: V.30, T.94, R.98, Q.99, R.105, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:V.30, C:I.251 Hydrogen bonds: C:Q.99, C:N.137, C:T.247 Water bridges: C:V.30, C:Q.99, C:R.168 Salt bridges: C:R.105, C:R.105, C:R.168, C:H.192, C:H.192 88R.4: 13 residues within 4Å: Chain D: V.30, T.94, R.98, Q.99, R.105, V.135, N.137, L.164, R.168, H.192, A.237, T.247, I.251 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:V.30, D:I.251 Hydrogen bonds: D:Q.99, D:R.105, D:N.137, D:T.247 Water bridges: D:R.98, D:T.247 Salt bridges: D:R.105, D:R.168, D:H.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)

Release Date

2012-03-21

Peptides

L-LACTATE DEHYDROGENASE A CHAIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-LACTATE DEHYDROGENASE A CHAIN

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