- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 88W: N~3~-(ethylcarbamoyl)-N-(2-methyl-1,3-benzothiazol-6-yl)-beta-alaninamide
88W.2: 12 residues within 4Å:- Chain A: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:V.30, A:V.52, A:A.95, A:F.118
- Hydrogen bonds: A:D.51, A:G.96, A:G.96, A:G.96
- Water bridges: A:A.29, A:V.30, A:V.30, A:Y.82, A:T.94, A:T.94, A:N.112
88W.6: 13 residues within 4Å:- Chain B: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119, S.136
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:A.95, B:F.118, B:I.119
- Hydrogen bonds: B:D.51, B:G.96, B:G.96, B:G.96, B:R.98
- Water bridges: B:G.28, B:A.29, B:Y.82
88W.13: 11 residues within 4Å:- Chain C: G.26, G.28, D.51, V.52, T.94, A.95, G.96, I.115, F.118, I.119
- Ligands: DMS.10
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:V.52, C:A.95, C:F.118, C:I.119
- Hydrogen bonds: C:D.51, C:G.96, C:G.96, C:G.96
- Water bridges: C:G.28, C:A.29, C:A.29, C:N.112
88W.17: 11 residues within 4Å:- Chain D: G.26, G.28, D.51, V.52, T.94, A.95, G.96, R.98, I.115, F.118, I.119
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:V.52, D:A.95, D:F.118, D:I.119
- Hydrogen bonds: D:D.51, D:G.96, D:G.96, D:G.96
- Water bridges: D:G.28, D:G.28, D:A.29, D:V.30, D:N.112
- 8 x MLI: MALONATE ION(Non-functional Binders)
MLI.3: 8 residues within 4Å:- Chain A: R.105, N.137, L.164, R.168, H.192, A.237, T.247, I.251
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:L.164, A:I.251
- Hydrogen bonds: A:N.137, A:T.247, A:T.247
- Water bridges: A:T.247
- Salt bridges: A:R.105, A:R.105, A:R.168, A:H.192, A:H.192
MLI.4: 6 residues within 4Å:- Chain A: R.170, H.185, W.187, V.269
- Chain D: S.183, H.185
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain D- Water bridges: A:R.170, A:V.269, D:L.182, D:S.183, D:A.206
- Salt bridges: A:R.170, A:H.185, D:H.185, D:H.185
MLI.7: 6 residues within 4Å:- Chain B: R.170, H.185, W.187, V.269
- Chain C: S.183, H.185
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain C- Water bridges: B:R.170, B:V.269, C:L.182, C:S.183, C:A.206
- Salt bridges: B:R.170, B:H.185, C:H.185, C:H.185
MLI.8: 8 residues within 4Å:- Chain B: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Q.99, B:N.137, B:T.247, B:T.247
- Water bridges: B:T.247
- Salt bridges: B:R.105, B:R.105, B:R.168, B:H.192, B:H.192
MLI.14: 8 residues within 4Å:- Chain C: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:Q.99, C:N.137, C:T.247
- Water bridges: C:T.247, C:T.247
- Salt bridges: C:R.105, C:R.105, C:R.168, C:H.192, C:H.192
MLI.15: 7 residues within 4Å:- Chain B: S.183, H.185
- Chain C: R.170, H.185, W.187, V.269
- Ligands: GOL.9
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain C- Water bridges: B:L.182, B:S.183, B:S.183, C:R.170, C:H.185, C:V.269
- Salt bridges: B:H.185, B:H.185, C:R.170, C:H.185
MLI.18: 8 residues within 4Å:- Chain D: R.105, N.137, L.164, R.168, H.192, A.237, T.247, I.251
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:L.164, D:I.251
- Hydrogen bonds: D:N.137, D:T.247
- Water bridges: D:R.168, D:T.247
- Salt bridges: D:R.105, D:R.105, D:R.168, D:H.192, D:H.192
MLI.19: 6 residues within 4Å:- Chain A: S.183, H.185
- Chain D: R.170, H.185, W.187, V.269
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain D- Water bridges: A:L.182, A:S.183, D:R.170, D:H.185, D:V.269
- Salt bridges: A:H.185, A:H.185, D:R.170, D:H.185
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 88W: N~3~-(ethylcarbamoyl)-N-(2-methyl-1,3-benzothiazol-6-yl)-beta-alaninamide
- 8 x MLI: MALONATE ION(Non-functional Binders)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D