- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x GOL: GLYCEROL(Non-functional Binders)
GOL.1: 6 residues within 4Å:- Chain A: E.101, G.102, E.103, S.104, D.194, Y.238
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.101, A:E.103
- Water bridges: A:E.103
- 7 x W7E: 2-[[4-[2-[[3-[(2-methyl-1,3-benzothiazol-6-yl)amino]-3-oxidanylidene-propyl]carbamoylamino]ethoxy]phenyl]methyl]propanedioic acid(Non-covalent)
W7E.2: 23 residues within 4Å:- Chain A: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, Q.99, R.105, I.115, F.118, I.119, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251
- Ligands: W7E.3
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:V.30, A:V.52, A:V.52, A:A.95, A:F.118, A:I.119, A:V.135, A:I.251, A:I.251
- Hydrogen bonds: A:D.51, A:G.96, A:G.96, A:G.96, A:Q.99, A:N.137, A:T.247
- Water bridges: A:G.28, A:V.30, A:Y.82, A:N.137, A:T.247
- Salt bridges: A:R.105, A:R.105, A:R.168, A:H.192, A:H.192
W7E.3: 9 residues within 4Å:- Chain A: G.28, A.29, V.52, G.96, A.97, R.98, R.111, I.115
- Ligands: W7E.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.52, A:R.98, A:I.115
- Hydrogen bonds: A:A.29, A:R.98, A:R.111
- Water bridges: A:R.98, A:R.98, A:R.111
- Salt bridges: A:R.98, A:R.98
W7E.4: 24 residues within 4Å:- Chain B: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, R.98, Q.99, R.105, I.115, F.118, I.119, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251
- Ligands: W7E.5
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:V.30, B:V.52, B:A.95, B:F.118, B:I.119, B:V.135, B:I.251, B:I.251
- Hydrogen bonds: B:D.51, B:G.96, B:G.96, B:G.96, B:Q.99, B:N.137, B:T.247, B:T.247
- Water bridges: B:V.30, B:T.94, B:N.137, B:A.237
- Salt bridges: B:R.105, B:R.105, B:R.168, B:H.192, B:H.192
W7E.5: 9 residues within 4Å:- Chain B: G.28, A.29, V.52, G.96, A.97, R.98, R.111, I.115
- Ligands: W7E.4
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:V.52, B:R.98, B:R.111, B:I.115
- Hydrogen bonds: B:A.29, B:R.98, B:R.111
- Water bridges: B:K.56, B:R.98, B:R.98
- Salt bridges: B:K.56, B:R.98
- pi-Cation interactions: B:R.98
W7E.6: 23 residues within 4Å:- Chain C: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, Q.99, R.105, I.115, F.118, I.119, V.135, S.136, N.137, L.164, R.168, H.192, A.237, T.247, I.251
- Ligands: W7E.7
25 PLIP interactions:25 interactions with chain C- Hydrophobic interactions: C:V.30, C:V.52, C:A.95, C:F.118, C:I.119, C:V.135, C:I.251, C:I.251
- Hydrogen bonds: C:D.51, C:G.96, C:G.96, C:G.96, C:Q.99, C:N.137, C:T.247
- Water bridges: C:G.28, C:V.30, C:N.137, C:A.237, C:T.247
- Salt bridges: C:R.105, C:R.105, C:R.168, C:H.192, C:H.192
W7E.7: 10 residues within 4Å:- Chain C: G.28, A.29, V.52, K.56, G.96, A.97, R.98, R.111, I.115
- Ligands: W7E.6
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:V.52, C:R.98, C:R.111, C:I.115
- Hydrogen bonds: C:A.29, C:R.98, C:R.111
- Water bridges: C:V.30, C:K.56, C:R.98
W7E.8: 21 residues within 4Å:- Chain D: G.26, G.28, V.30, D.51, V.52, T.94, A.95, G.96, Q.99, R.105, I.115, F.118, I.119, V.135, N.137, L.164, R.168, H.192, A.237, T.247, I.251
24 PLIP interactions:24 interactions with chain D- Hydrophobic interactions: D:V.30, D:V.52, D:A.95, D:F.118, D:I.119, D:V.135, D:I.251, D:I.251
- Hydrogen bonds: D:D.51, D:G.96, D:G.96, D:G.96, D:Q.99, D:N.137, D:T.247
- Water bridges: D:G.28, D:N.137, D:N.137, D:T.247
- Salt bridges: D:R.105, D:R.105, D:R.168, D:H.192, D:H.192
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 7 x W7E: 2-[[4-[2-[[3-[(2-methyl-1,3-benzothiazol-6-yl)amino]-3-oxidanylidene-propyl]carbamoylamino]ethoxy]phenyl]methyl]propanedioic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, R. et al., The Design and Synthesis of Novel Lactate Dehydrogenase a Inhibitors by Fragment-Based Lead Generation. J.Med.Chem. (2012)
- Release Date
- 2012-03-21
- Peptides
- L-LACTATE DEHYDROGENASE A CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D