SMTL ID : 4al8.1

Structure of Dengue virus DIII in complex with Fab 2H12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain B: Q.39, K.43, G.44, L.45 Chain C: D.85, F.87, G.99, G.100, G.101 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.99, B:Q.39, B:L.45 Water bridges: C:Q.38, C:D.85 GOL.2: 6 residues within 4Å: Chain B: K.38, R.40, E.46, K.63, F.64, E.89 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.38, B:K.38, B:R.40 Water bridges: B:E.46, B:K.63, B:K.63 GOL.3: 6 residues within 4Å: Chain B: Y.95 Chain C: Q.38, K.39, P.40, G.41, Q.42 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:Y.95, B:Y.95, C:Q.38, C:G.41, C:Q.42 Water bridges: B:Q.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Midgley, C.M. et al., Structural Analysis of a Dengue Cross-Reactive Antibody Complexed with Envelope Domain III Reveals the Molecular Basis of Cross-Reactivity. J.Immunol. (2012)

Release Date

2012-06-06

Peptides

ENVELOPE PROTEIN: A
FAB 2H12 HEAVY CHAIN: B
FAB 2H12 LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

ENVELOPE PROTEIN

FAB 2H12 HEAVY CHAIN

FAB 2H12 LIGHT CHAIN

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