- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DUR: 2'-DEOXYURIDINE(Non-covalent)
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.2: 11 residues within 4Å:- Chain A: R.135, G.137, L.138, G.139, S.140, T.141
- Chain C: R.63, S.64, S.65
- Ligands: MG.3, DUR.4
18 PLIP interactions:9 interactions with chain C, 9 interactions with chain A- Hydrogen bonds: C:S.64, C:S.64, C:S.65, A:G.139, A:S.140, A:T.141, A:T.141
- Water bridges: C:D.27, C:R.63, C:R.109, C:Q.112, A:R.135, A:R.135, A:R.135, A:T.141
- Salt bridges: C:R.63, C:R.63, A:R.135
POP.5: 11 residues within 4Å:- Chain A: R.63, S.64, S.65
- Chain B: R.135, G.137, L.138, G.139, S.140, T.141
- Ligands: MG.6, DUR.7
20 PLIP interactions:9 interactions with chain A, 10 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: A:S.64, A:S.64, A:S.65, B:G.139, B:S.140, B:T.141, B:T.141, B:T.141
- Water bridges: A:D.27, A:R.63, A:R.109, A:Q.112, B:R.135, B:R.135, B:R.135, B:T.141, C:N.76
- Salt bridges: A:R.63, A:R.63, B:R.135
POP.8: 11 residues within 4Å:- Chain B: R.63, S.64, S.65
- Chain C: R.135, G.137, L.138, G.139, S.140, T.141
- Ligands: DUR.1, MG.9
19 PLIP interactions:10 interactions with chain C, 9 interactions with chain B- Hydrogen bonds: C:G.139, C:S.140, C:T.141, C:T.141, C:T.141, B:S.64, B:S.64, B:S.65
- Water bridges: C:R.135, C:R.135, C:R.135, C:T.141, B:D.27, B:R.63, B:R.109, B:Q.112
- Salt bridges: C:R.135, B:R.63, B:R.63
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: R.135
- Ligands: POP.2
No protein-ligand interaction detected (PLIP)MG.6: 2 residues within 4Å:- Chain B: R.135
- Ligands: POP.5
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain C: R.135
- Ligands: POP.8
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia-Nafria, J. et al., Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-04-24
- Peptides
- PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YNCF: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SB
TC
U
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DUR: 2'-DEOXYURIDINE(Non-covalent)
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia-Nafria, J. et al., Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-04-24
- Peptides
- PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YNCF: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SB
TC
U