SMTL ID : 4aqd.2 (2 other biounits)

Crystal structure of fully glycosylated human butyrylcholinesterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: I.6, N.19, T.26 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: K.107, N.108, N.190, K.192 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.192, A:K.192

3 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.2: 3 residues within 4Å: Chain A: R.16, I.57, N.59 No protein-ligand interaction detected (PLIP) NAG-NAG-FUL.4: 5 residues within 4Å: Chain A: N.243, N.247, K.250, F.280, P.283 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.247, A:K.250 NAG-NAG-FUL.6: 6 residues within 4Å: Chain A: E.484, N.488, S.489, T.490, E.508, T.510 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.510 Hydrogen bonds: A:N.488, A:T.490, A:T.490

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.5: 6 residues within 4Å: Chain A: Y.479, N.481, N.483, E.484, T.485, Q.486 No protein-ligand interaction detected (PLIP)

1 x BAL: BETA-ALANINE(Non-covalent)

BAL.7: 10 residues within 4Å: Chain A: G.118, G.119, S.200, A.201, W.233, L.288, H.440 Ligands: UNX.20, UNX.21, UNX.22 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.118, A:G.119, A:S.200, A:A.201 Water bridges: A:L.288 Salt bridges: A:H.440

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain A: G.338, S.340, N.343 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.338, A:S.340, A:N.343

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.9: 3 residues within 4Å: Chain A: S.428, N.457, Y.458 No protein-ligand interaction detected (PLIP) PG4.10: 5 residues within 4Å: Chain A: L.309, E.310, K.410, E.413, W.414 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.309

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 5 residues within 4Å: Chain A: N.230, C.402, P.403, E.406, T.525 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.230 EDO.12: 4 residues within 4Å: Chain A: F.23, L.452, E.453, R.454 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.453, A:R.454 Water bridges: A:R.454 EDO.13: 5 residues within 4Å: Chain A: H.79, S.427, K.429, L.430, E.445 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.427, A:E.445 EDO.14: 2 residues within 4Å: Chain A: K.496, T.498 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.498 EDO.15: 4 residues within 4Å: Chain A: E.424, H.425, N.506, T.507 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.507, A:E.508 Water bridges: A:R.426 EDO.16: 2 residues within 4Å: Chain A: N.481, W.492 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.481 EDO.17: 8 residues within 4Å: Chain A: L.31, G.32, W.58, N.59, A.60, K.62, A.64, Y.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59 EDO.18: 4 residues within 4Å: Chain A: G.118, G.119, Q.121, T.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.122, A:S.289 EDO.19: 7 residues within 4Å: Chain A: Y.35, S.50, L.51, L.175, Q.178, W.179, K.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.35, A:L.51, A:K.182, A:K.182

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.20: 6 residues within 4Å: Chain A: E.199, S.200 Ligands: BAL.7, UNX.21, UNX.22, UNX.23 No protein-ligand interaction detected (PLIP) UNX.21: 5 residues within 4Å: Chain A: W.84 Ligands: BAL.7, UNX.20, UNX.22, UNX.23 No protein-ligand interaction detected (PLIP) UNX.22: 4 residues within 4Å: Ligands: BAL.7, UNX.20, UNX.21, UNX.23 No protein-ligand interaction detected (PLIP) UNX.23: 4 residues within 4Å: Chain A: W.84 Ligands: UNX.20, UNX.21, UNX.22 No protein-ligand interaction detected (PLIP) UNX.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.24: 1 residues within 4Å: Chain A: V.138 Ligand excluded by PLIP CL.25: 6 residues within 4Å: Chain A: R.472, P.482, N.483, T.490, S.491, W.492 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain A: E.385, R.388 Ligand excluded by PLIP

1 x GLY: GLYCINE(Non-covalent)

GLY.28: 5 residues within 4Å: Chain A: L.20, Y.63, W.100, D.131, K.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.100, A:D.131 Salt bridges: A:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brazzolotto, X. et al., Human butyrylcholinesterase produced in insect cells: huprine-based affinity purification and crystal structure. FEBS J. (2012)

Release Date

2012-07-04

Peptides

BUTYRYLCHOLINESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BUTYRYLCHOLINESTERASE

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