SMTL ID : 4aqd.3 (2 other biounits)

Crystal structure of fully glycosylated human butyrylcholinesterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 8 residues within 4Å: Chain A: Y.239, N.243, N.247, K.250, L.251, F.280, P.283, Y.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.247, A:N.247 NAG-NAG-FUL.2: 4 residues within 4Å: Chain A: E.257, N.258, T.260, E.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.257, A:E.257 NAG-NAG-FUL.3: 3 residues within 4Å: Chain A: K.429, D.456, N.457 No protein-ligand interaction detected (PLIP)

1 x BAL: BETA-ALANINE(Non-covalent)

BAL.4: 8 residues within 4Å: Chain A: G.118, G.119, S.200, A.201, L.288, V.290, H.440 Ligands: UNX.24 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.118, A:G.119, A:S.200, A:A.201, A:L.288 Salt bridges: A:H.440

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: I.6, N.19, T.26 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain A: R.16, N.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59 NAG.7: 3 residues within 4Å: Chain A: N.108, N.190, K.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.108, A:N.190 Water bridges: A:N.108, A:K.192 NAG.8: 5 residues within 4Å: Chain A: G.338, F.339, S.340, N.343, N.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.338, A:S.340 NAG.9: 3 residues within 4Å: Chain A: Y.479, N.483, E.484 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 9 residues within 4Å: Chain A: H.209, L.210, L.211, S.212, P.213, H.216, Q.313, F.314, K.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.209, A:Q.313 PEG.11: 10 residues within 4Å: Chain A: H.79, M.83, H.128, S.427, K.429, L.430, P.431, Y.442, E.445, Y.458 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.427, A:S.427, A:Y.458

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 3 residues within 4Å: Chain A: S.370, F.373, F.527 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.370 EDO.13: 6 residues within 4Å: Chain A: Y.35, S.50, L.51, L.175, W.179, K.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.51, A:K.182 EDO.14: 7 residues within 4Å: Chain A: P.451, E.453, R.454, N.457, Y.458, T.459, E.463 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.457, A:E.463, A:E.463 EDO.15: 5 residues within 4Å: Chain A: G.160, P.162, P.165, D.297, G.298 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.160, A:P.162 EDO.16: 3 residues within 4Å: Chain A: P.287, Y.334 Ligands: EDO.20 No protein-ligand interaction detected (PLIP) EDO.17: 5 residues within 4Å: Chain A: R.44, R.267, N.268, K.269, D.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.44, A:E.92, A:N.268 Water bridges: A:E.92 EDO.18: 5 residues within 4Å: Chain A: T.286, L.288, F.359, Y.398, N.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.286, A:N.399 Water bridges: A:L.288 EDO.19: 8 residues within 4Å: Chain A: Q.37, P.39, L.43, K.46, K.47, P.48, Q.49, R.149 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.37, A:K.46, A:Q.49, A:R.149, A:R.149 EDO.20: 4 residues within 4Å: Chain A: N.70, D.72, T.122 Ligands: EDO.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.70 Water bridges: A:N.70 EDO.21: 5 residues within 4Å: Chain A: K.62, Y.63, N.65, T.88, D.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:D.89, A:D.89

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.22: 6 residues within 4Å: Chain A: G.117, G.118, E.199 Ligands: UNX.23, UNX.24, UNX.25 No protein-ligand interaction detected (PLIP) UNX.23: 4 residues within 4Å: Chain A: W.84 Ligands: UNX.22, UNX.24, UNX.25 No protein-ligand interaction detected (PLIP) UNX.24: 6 residues within 4Å: Chain A: E.199, H.440 Ligands: BAL.4, UNX.22, UNX.23, UNX.25 No protein-ligand interaction detected (PLIP) UNX.25: 4 residues within 4Å: Chain A: W.84 Ligands: UNX.22, UNX.23, UNX.24 No protein-ligand interaction detected (PLIP) UNX.28: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.26: 3 residues within 4Å: Chain A: W.233, R.244, V.290 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain A: K.460, I.464 Ligand excluded by PLIP CL.29: 1 residues within 4Å: Chain A: D.297 Ligand excluded by PLIP CL.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x GLY: GLYCINE(Non-covalent)

GLY.31: 5 residues within 4Å: Chain A: L.20, Y.63, W.100, D.131, K.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.100 Salt bridges: A:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brazzolotto, X. et al., Human butyrylcholinesterase produced in insect cells: huprine-based affinity purification and crystal structure. FEBS J. (2012)

Release Date

2012-07-04

Peptides

BUTYRYLCHOLINESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

BUTYRYLCHOLINESTERASE

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