SMTL ID : 4azs.1

High resolution (2.2 A) crystal structure of WbdD.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-12-mer

Ligands

12 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.239, A:E.322, A:L.324, A:W.368 AMP.16: 13 residues within 4Å: Chain B: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.239, B:E.322, B:L.324, B:W.368 AMP.31: 13 residues within 4Å: Chain C: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.239, C:E.322, C:L.324, C:W.368 AMP.46: 13 residues within 4Å: Chain D: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.239, D:E.322, D:L.324, D:W.368 AMP.61: 13 residues within 4Å: Chain E: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.239, E:E.322, E:L.324, E:W.368 AMP.76: 13 residues within 4Å: Chain F: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:Q.239, F:E.322, F:L.324, F:W.368 AMP.91: 13 residues within 4Å: Chain G: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:Q.239, G:E.322, G:L.324, G:W.368 AMP.106: 13 residues within 4Å: Chain H: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:Q.239, H:E.322, H:L.324, H:W.368 AMP.121: 13 residues within 4Å: Chain I: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain I Hydrogen bonds: I:Q.239, I:E.322, I:L.324, I:W.368 AMP.136: 13 residues within 4Å: Chain J: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:Q.239, J:E.322, J:L.324, J:W.368 AMP.151: 13 residues within 4Å: Chain K: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:Q.239, K:E.322, K:L.324, K:W.368 AMP.166: 13 residues within 4Å: Chain L: Q.239, P.242, Y.256, F.258, V.263, M.321, E.322, K.323, L.324, L.328, W.368, M.371, I.381 4 PLIP interactions: 4 interactions with chain L Hydrogen bonds: L:Q.239, L:E.322, L:L.324, L:W.368

12 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 18 residues within 4Å: Chain A: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.29, A:A.76 Hydrogen bonds: A:Q.30, A:G.74, A:A.76, A:F.96, A:Q.97, A:N.100, A:I.123, A:E.124 Water bridges: A:N.100, A:R.122, A:L.141 Salt bridges: A:R.49 pi-Stacking: A:F.96, A:F.96 pi-Cation interactions: A:Y.29 SAM.17: 18 residues within 4Å: Chain B: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.29, B:A.76 Hydrogen bonds: B:Q.30, B:G.74, B:A.76, B:F.96, B:Q.97, B:N.100, B:I.123, B:E.124 Water bridges: B:N.100, B:R.122, B:L.141 Salt bridges: B:R.49 pi-Stacking: B:F.96, B:F.96 pi-Cation interactions: B:Y.29 SAM.32: 18 residues within 4Å: Chain C: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:Y.29, C:A.76 Hydrogen bonds: C:Q.30, C:G.74, C:A.76, C:F.96, C:Q.97, C:N.100, C:I.123, C:E.124 Water bridges: C:N.100, C:R.122, C:L.141 Salt bridges: C:R.49 pi-Stacking: C:F.96, C:F.96 pi-Cation interactions: C:Y.29 SAM.47: 18 residues within 4Å: Chain D: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:Y.29, D:A.76 Hydrogen bonds: D:Q.30, D:G.74, D:A.76, D:F.96, D:Q.97, D:N.100, D:I.123, D:E.124 Water bridges: D:N.100, D:R.122, D:L.141 Salt bridges: D:R.49 pi-Stacking: D:F.96, D:F.96 pi-Cation interactions: D:Y.29 SAM.62: 18 residues within 4Å: Chain E: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:Y.29, E:A.76 Hydrogen bonds: E:Q.30, E:G.74, E:A.76, E:F.96, E:Q.97, E:N.100, E:I.123, E:E.124 Water bridges: E:N.100, E:R.122, E:L.141 Salt bridges: E:R.49 pi-Stacking: E:F.96, E:F.96 pi-Cation interactions: E:Y.29 SAM.77: 18 residues within 4Å: Chain F: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain F Hydrophobic interactions: F:Y.29, F:A.76 Hydrogen bonds: F:Q.30, F:G.74, F:A.76, F:F.96, F:Q.97, F:N.100, F:I.123, F:E.124 Water bridges: F:N.100, F:R.122, F:L.141 Salt bridges: F:R.49 pi-Stacking: F:F.96, F:F.96 pi-Cation interactions: F:Y.29 SAM.92: 18 residues within 4Å: Chain G: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain G Hydrophobic interactions: G:Y.29, G:A.76 Hydrogen bonds: G:Q.30, G:G.74, G:A.76, G:F.96, G:Q.97, G:N.100, G:I.123, G:E.124 Water bridges: G:N.100, G:R.122, G:L.141 Salt bridges: G:R.49 pi-Stacking: G:F.96, G:F.96 pi-Cation interactions: G:Y.29 SAM.107: 18 residues within 4Å: Chain H: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain H Hydrophobic interactions: H:Y.29, H:A.76 Hydrogen bonds: H:Q.30, H:G.74, H:A.76, H:F.96, H:Q.97, H:N.100, H:I.123, H:E.124 Water bridges: H:N.100, H:R.122, H:L.141 Salt bridges: H:R.49 pi-Stacking: H:F.96, H:F.96 pi-Cation interactions: H:Y.29 SAM.122: 18 residues within 4Å: Chain I: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain I Hydrophobic interactions: I:Y.29, I:A.76 Hydrogen bonds: I:Q.30, I:G.74, I:A.76, I:F.96, I:Q.97, I:N.100, I:I.123, I:E.124 Water bridges: I:N.100, I:R.122, I:L.141 Salt bridges: I:R.49 pi-Stacking: I:F.96, I:F.96 pi-Cation interactions: I:Y.29 SAM.137: 18 residues within 4Å: Chain J: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain J Hydrophobic interactions: J:Y.29, J:A.76 Hydrogen bonds: J:Q.30, J:G.74, J:A.76, J:F.96, J:Q.97, J:N.100, J:I.123, J:E.124 Water bridges: J:N.100, J:R.122, J:L.141 Salt bridges: J:R.49 pi-Stacking: J:F.96, J:F.96 pi-Cation interactions: J:Y.29 SAM.152: 18 residues within 4Å: Chain K: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain K Hydrophobic interactions: K:Y.29, K:A.76 Hydrogen bonds: K:Q.30, K:G.74, K:A.76, K:F.96, K:Q.97, K:N.100, K:I.123, K:E.124 Water bridges: K:N.100, K:R.122, K:L.141 Salt bridges: K:R.49 pi-Stacking: K:F.96, K:F.96 pi-Cation interactions: K:Y.29 SAM.167: 18 residues within 4Å: Chain L: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, H.146 17 PLIP interactions: 17 interactions with chain L Hydrophobic interactions: L:Y.29, L:A.76 Hydrogen bonds: L:Q.30, L:G.74, L:A.76, L:F.96, L:Q.97, L:N.100, L:I.123, L:E.124 Water bridges: L:N.100, L:R.122, L:L.141 Salt bridges: L:R.49 pi-Stacking: L:F.96, L:F.96 pi-Cation interactions: L:Y.29

132 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: A.63, R.225, P.234 Ligand excluded by PLIP SO4.5: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.105, R.119, V.120 Ligand excluded by PLIP SO4.7: 11 residues within 4Å: Chain A: P.180, F.181, Y.182 Chain B: P.180, F.181, Y.182 Chain J: P.180, F.181, Y.182 Ligands: SO4.22, SO4.142 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: H.237, F.258, K.323 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain A: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: S.347, R.350, H.377 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain A: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: N.313, A.314 Chain B: N.19 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain B: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: A.63, R.225, P.234 Ligand excluded by PLIP SO4.20: 1 residues within 4Å: Chain B: R.66 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain B: R.105, R.119, V.120 Ligand excluded by PLIP SO4.22: 11 residues within 4Å: Chain A: P.180, F.181, Y.182 Chain B: P.180, F.181, Y.182 Chain J: P.180, F.181, Y.182 Ligands: SO4.7, SO4.142 Ligand excluded by PLIP SO4.23: 8 residues within 4Å: Chain B: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: H.237, F.258, K.323 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain B: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain B: S.347, R.350, H.377 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain B: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain B: N.313, A.314 Chain J: N.19 Ligand excluded by PLIP SO4.33: 8 residues within 4Å: Chain C: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain C: A.63, R.225, P.234 Ligand excluded by PLIP SO4.35: 1 residues within 4Å: Chain C: R.66 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain C: R.105, R.119, V.120 Ligand excluded by PLIP SO4.37: 11 residues within 4Å: Chain C: P.180, F.181, Y.182 Chain F: P.180, F.181, Y.182 Chain I: P.180, F.181, Y.182 Ligands: SO4.82, SO4.127 Ligand excluded by PLIP SO4.38: 8 residues within 4Å: Chain C: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain C: H.237, F.258, K.323 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain C: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain C: S.347, R.350, H.377 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain C: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain C: N.313, A.314 Chain F: N.19 Ligand excluded by PLIP SO4.48: 8 residues within 4Å: Chain D: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain D: A.63, R.225, P.234 Ligand excluded by PLIP SO4.50: 1 residues within 4Å: Chain D: R.66 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain D: R.105, R.119, V.120 Ligand excluded by PLIP SO4.52: 11 residues within 4Å: Chain D: P.180, F.181, Y.182 Chain E: P.180, F.181, Y.182 Chain K: P.180, F.181, Y.182 Ligands: SO4.67, SO4.157 Ligand excluded by PLIP SO4.53: 8 residues within 4Å: Chain D: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain D: H.237, F.258, K.323 Ligand excluded by PLIP SO4.55: 5 residues within 4Å: Chain D: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain D: S.347, R.350, H.377 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain D: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.58: 3 residues within 4Å: Chain D: N.313, A.314 Chain K: N.19 Ligand excluded by PLIP SO4.63: 8 residues within 4Å: Chain E: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.64: 3 residues within 4Å: Chain E: A.63, R.225, P.234 Ligand excluded by PLIP SO4.65: 1 residues within 4Å: Chain E: R.66 Ligand excluded by PLIP SO4.66: 3 residues within 4Å: Chain E: R.105, R.119, V.120 Ligand excluded by PLIP SO4.67: 11 residues within 4Å: Chain D: P.180, F.181, Y.182 Chain E: P.180, F.181, Y.182 Chain K: P.180, F.181, Y.182 Ligands: SO4.52, SO4.157 Ligand excluded by PLIP SO4.68: 8 residues within 4Å: Chain E: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.69: 3 residues within 4Å: Chain E: H.237, F.258, K.323 Ligand excluded by PLIP SO4.70: 5 residues within 4Å: Chain E: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.71: 3 residues within 4Å: Chain E: S.347, R.350, H.377 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain E: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.73: 3 residues within 4Å: Chain D: N.19 Chain E: N.313, A.314 Ligand excluded by PLIP SO4.78: 8 residues within 4Å: Chain F: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain F: A.63, R.225, P.234 Ligand excluded by PLIP SO4.80: 1 residues within 4Å: Chain F: R.66 Ligand excluded by PLIP SO4.81: 3 residues within 4Å: Chain F: R.105, R.119, V.120 Ligand excluded by PLIP SO4.82: 11 residues within 4Å: Chain C: P.180, F.181, Y.182 Chain F: P.180, F.181, Y.182 Chain I: P.180, F.181, Y.182 Ligands: SO4.37, SO4.127 Ligand excluded by PLIP SO4.83: 8 residues within 4Å: Chain F: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.84: 3 residues within 4Å: Chain F: H.237, F.258, K.323 Ligand excluded by PLIP SO4.85: 5 residues within 4Å: Chain F: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.86: 3 residues within 4Å: Chain F: S.347, R.350, H.377 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain F: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.88: 3 residues within 4Å: Chain F: N.313, A.314 Chain I: N.19 Ligand excluded by PLIP SO4.93: 8 residues within 4Å: Chain G: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain G: A.63, R.225, P.234 Ligand excluded by PLIP SO4.95: 1 residues within 4Å: Chain G: R.66 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain G: R.105, R.119, V.120 Ligand excluded by PLIP SO4.97: 11 residues within 4Å: Chain G: P.180, F.181, Y.182 Chain H: P.180, F.181, Y.182 Chain L: P.180, F.181, Y.182 Ligands: SO4.112, SO4.172 Ligand excluded by PLIP SO4.98: 8 residues within 4Å: Chain G: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.99: 3 residues within 4Å: Chain G: H.237, F.258, K.323 Ligand excluded by PLIP SO4.100: 5 residues within 4Å: Chain G: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.101: 3 residues within 4Å: Chain G: S.347, R.350, H.377 Ligand excluded by PLIP SO4.102: 5 residues within 4Å: Chain G: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.103: 3 residues within 4Å: Chain G: N.313, A.314 Chain L: N.19 Ligand excluded by PLIP SO4.108: 8 residues within 4Å: Chain H: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.109: 3 residues within 4Å: Chain H: A.63, R.225, P.234 Ligand excluded by PLIP SO4.110: 1 residues within 4Å: Chain H: R.66 Ligand excluded by PLIP SO4.111: 3 residues within 4Å: Chain H: R.105, R.119, V.120 Ligand excluded by PLIP SO4.112: 11 residues within 4Å: Chain G: P.180, F.181, Y.182 Chain H: P.180, F.181, Y.182 Chain L: P.180, F.181, Y.182 Ligands: SO4.97, SO4.172 Ligand excluded by PLIP SO4.113: 8 residues within 4Å: Chain H: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.114: 3 residues within 4Å: Chain H: H.237, F.258, K.323 Ligand excluded by PLIP SO4.115: 5 residues within 4Å: Chain H: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.116: 3 residues within 4Å: Chain H: S.347, R.350, H.377 Ligand excluded by PLIP SO4.117: 5 residues within 4Å: Chain H: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.118: 3 residues within 4Å: Chain G: N.19 Chain H: N.313, A.314 Ligand excluded by PLIP SO4.123: 8 residues within 4Å: Chain I: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.124: 3 residues within 4Å: Chain I: A.63, R.225, P.234 Ligand excluded by PLIP SO4.125: 1 residues within 4Å: Chain I: R.66 Ligand excluded by PLIP SO4.126: 3 residues within 4Å: Chain I: R.105, R.119, V.120 Ligand excluded by PLIP SO4.127: 11 residues within 4Å: Chain C: P.180, F.181, Y.182 Chain F: P.180, F.181, Y.182 Chain I: P.180, F.181, Y.182 Ligands: SO4.37, SO4.82 Ligand excluded by PLIP SO4.128: 8 residues within 4Å: Chain I: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.129: 3 residues within 4Å: Chain I: H.237, F.258, K.323 Ligand excluded by PLIP SO4.130: 5 residues within 4Å: Chain I: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.131: 3 residues within 4Å: Chain I: S.347, R.350, H.377 Ligand excluded by PLIP SO4.132: 5 residues within 4Å: Chain I: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.133: 3 residues within 4Å: Chain C: N.19 Chain I: N.313, A.314 Ligand excluded by PLIP SO4.138: 8 residues within 4Å: Chain J: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.139: 3 residues within 4Å: Chain J: A.63, R.225, P.234 Ligand excluded by PLIP SO4.140: 1 residues within 4Å: Chain J: R.66 Ligand excluded by PLIP SO4.141: 3 residues within 4Å: Chain J: R.105, R.119, V.120 Ligand excluded by PLIP SO4.142: 11 residues within 4Å: Chain A: P.180, F.181, Y.182 Chain B: P.180, F.181, Y.182 Chain J: P.180, F.181, Y.182 Ligands: SO4.7, SO4.22 Ligand excluded by PLIP SO4.143: 8 residues within 4Å: Chain J: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.144: 3 residues within 4Å: Chain J: H.237, F.258, K.323 Ligand excluded by PLIP SO4.145: 5 residues within 4Å: Chain J: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.146: 3 residues within 4Å: Chain J: S.347, R.350, H.377 Ligand excluded by PLIP SO4.147: 5 residues within 4Å: Chain J: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.148: 3 residues within 4Å: Chain A: N.19 Chain J: N.313, A.314 Ligand excluded by PLIP SO4.153: 8 residues within 4Å: Chain K: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.154: 3 residues within 4Å: Chain K: A.63, R.225, P.234 Ligand excluded by PLIP SO4.155: 1 residues within 4Å: Chain K: R.66 Ligand excluded by PLIP SO4.156: 3 residues within 4Å: Chain K: R.105, R.119, V.120 Ligand excluded by PLIP SO4.157: 11 residues within 4Å: Chain D: P.180, F.181, Y.182 Chain E: P.180, F.181, Y.182 Chain K: P.180, F.181, Y.182 Ligands: SO4.52, SO4.67 Ligand excluded by PLIP SO4.158: 8 residues within 4Å: Chain K: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.159: 3 residues within 4Å: Chain K: H.237, F.258, K.323 Ligand excluded by PLIP SO4.160: 5 residues within 4Å: Chain K: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.161: 3 residues within 4Å: Chain K: S.347, R.350, H.377 Ligand excluded by PLIP SO4.162: 5 residues within 4Å: Chain K: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.163: 3 residues within 4Å: Chain E: N.19 Chain K: N.313, A.314 Ligand excluded by PLIP SO4.168: 8 residues within 4Å: Chain L: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.169: 3 residues within 4Å: Chain L: A.63, R.225, P.234 Ligand excluded by PLIP SO4.170: 1 residues within 4Å: Chain L: R.66 Ligand excluded by PLIP SO4.171: 3 residues within 4Å: Chain L: R.105, R.119, V.120 Ligand excluded by PLIP SO4.172: 11 residues within 4Å: Chain G: P.180, F.181, Y.182 Chain H: P.180, F.181, Y.182 Chain L: P.180, F.181, Y.182 Ligands: SO4.97, SO4.112 Ligand excluded by PLIP SO4.173: 8 residues within 4Å: Chain L: R.192, Y.201, R.202, L.203, Y.219, Y.268, D.270, Q.315 Ligand excluded by PLIP SO4.174: 3 residues within 4Å: Chain L: H.237, F.258, K.323 Ligand excluded by PLIP SO4.175: 5 residues within 4Å: Chain L: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.176: 3 residues within 4Å: Chain L: S.347, R.350, H.377 Ligand excluded by PLIP SO4.177: 5 residues within 4Å: Chain L: R.105, A.116, E.117, F.118, R.119 Ligand excluded by PLIP SO4.178: 3 residues within 4Å: Chain H: N.19 Chain L: N.313, A.314 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 7 residues within 4Å: Chain A: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain A: E.155, R.158 Chain F: E.155, R.158 Ligands: CL.90 Ligand excluded by PLIP CL.29: 7 residues within 4Å: Chain B: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.30: 5 residues within 4Å: Chain B: E.155, R.158 Chain G: E.155, R.158 Ligands: CL.105 Ligand excluded by PLIP CL.44: 7 residues within 4Å: Chain C: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.45: 5 residues within 4Å: Chain C: E.155, R.158 Chain L: E.155, R.158 Ligands: CL.180 Ligand excluded by PLIP CL.59: 7 residues within 4Å: Chain D: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.60: 5 residues within 4Å: Chain D: E.155, R.158 Chain H: E.155, R.158 Ligands: CL.120 Ligand excluded by PLIP CL.74: 7 residues within 4Å: Chain E: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.75: 5 residues within 4Å: Chain E: E.155, R.158 Chain J: E.155, R.158 Ligands: CL.150 Ligand excluded by PLIP CL.89: 7 residues within 4Å: Chain F: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.90: 5 residues within 4Å: Chain A: E.155, R.158 Chain F: E.155, R.158 Ligands: CL.15 Ligand excluded by PLIP CL.104: 7 residues within 4Å: Chain G: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.105: 5 residues within 4Å: Chain B: E.155, R.158 Chain G: E.155, R.158 Ligands: CL.30 Ligand excluded by PLIP CL.119: 7 residues within 4Å: Chain H: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.120: 5 residues within 4Å: Chain D: E.155, R.158 Chain H: E.155, R.158 Ligands: CL.60 Ligand excluded by PLIP CL.134: 7 residues within 4Å: Chain I: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.135: 5 residues within 4Å: Chain I: E.155, R.158 Chain K: E.155, R.158 Ligands: CL.165 Ligand excluded by PLIP CL.149: 7 residues within 4Å: Chain J: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.150: 5 residues within 4Å: Chain E: E.155, R.158 Chain J: E.155, R.158 Ligands: CL.75 Ligand excluded by PLIP CL.164: 7 residues within 4Å: Chain K: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.165: 5 residues within 4Å: Chain I: E.155, R.158 Chain K: E.155, R.158 Ligands: CL.135 Ligand excluded by PLIP CL.179: 7 residues within 4Å: Chain L: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.180: 5 residues within 4Å: Chain C: E.155, R.158 Chain L: E.155, R.158 Ligands: CL.45 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagelueken, G. et al., Structure of Wbdd; a Bifunctional Kinase and Methyltransferase that Regulates the Chain Length of the O Antigen in Escherichia Coli O9A. Mol.Microbiol. (2012)

Release Date

2012-09-26

Peptides

METHYLTRANSFERASE WBDD: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

METHYLTRANSFERASE WBDD

Related Entries With Identical Sequence