SMTL ID : 4b1d.1

New Aminoimidazoles as BACE-1 Inhibitors: From Rational Design to Ab- lowering in Brain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 10 residues within 4Å: Chain A: A.46, A.47, P.48, H.49, L.52, I.106, T.107, E.108, S.109, F.113 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.52, A:F.113 Water bridges: A:S.109, A:S.109 Salt bridges: A:H.49 ACT.2: 4 residues within 4Å: Chain A: G.234, T.235, T.236 Ligands: 6TG.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.236, A:T.236 Water bridges: A:G.15, A:N.237

1 x 6TG: (2S)-2-(4-methoxy-3,5-dimethylphenyl)-5-methyl-2-(3-pyrimidin-5-ylphenyl)-2H-imidazol-4-amine(Non-covalent)

6TG.3: 20 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, G.38, S.39, V.73, Y.75, W.80, F.112, I.114, W.119, I.122, R.132, D.232, G.234, T.235, T.236 Ligands: ACT.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.73, A:Y.75, A:F.112, A:W.119, A:I.122 Hydrogen bonds: A:D.36 Water bridges: A:T.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gravenfors, Y. et al., New aminoimidazoles as beta-secretase (BACE-1) inhibitors showing amyloid-beta (A beta ) lowering in brain. J. Med. Chem. (2012)

Release Date

2012-10-10

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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