SMTL ID : 4b77.1

Aminoimidazoles as BACE-1 Inhibitors: From De Novo Design to Ab- lowering in Brain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: G.38, S.39, I.130, R.132, Y.202 Ligands: 54M.2 No protein-ligand interaction detected (PLIP)

1 x 54M: (5R)-5-(4-methoxyphenyl)-5-(3-pyrimidin-5-ylphenyl)-3,4-dihydropyrrol-2-amine(Non-covalent)

54M.2: 19 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, G.38, S.39, N.41, V.73, Y.75, W.80, F.112, I.114, W.119, I.122, D.232, G.234, T.236 Ligands: DMS.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.112, A:W.119, A:I.122 Hydrogen bonds: A:D.36 Water bridges: A:T.236 pi-Stacking: A:Y.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ginman, T. et al., Core Refinement Toward Permeable Beta-Secretase (Bace-1) Inhibitors with Low Herg Activity. J.Med.Chem. (2013)

Release Date

2013-06-26

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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