SMTL ID : 4b2p.1

RadA C-terminal ATPase domain from Pyrococcus furiosus bound to GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 14 residues within 4Å: Chain A: E.33, F.34, G.35, S.36, G.37, K.38, T.39, Q.40, R.75, Q.178, R.205, I.224 Ligands: MG.2, GOL.4 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.35, A:G.35, A:S.36, A:G.37, A:K.38, A:T.39, A:T.39, A:Q.40, A:Q.178, A:R.205 Water bridges: A:T.39, A:E.68, A:R.75, A:R.75, A:E.78, A:E.78 Salt bridges: A:K.38, A:K.38, A:E.78

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.39 Ligands: GTP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.39, H2O.1, H2O.1, H2O.1

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: I.63, A.97, L.108, A.112, K.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.108 Water bridges: A:Q.111, A:K.115 GOL.4: 6 residues within 4Å: Chain A: T.39, Q.40, H.43, T.70, R.72 Ligands: GTP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.72 Water bridges: A:T.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marsh, M.E. et al., ATP Half-Sites in Rada and Rad51 Recombinases Bind Nucleotides. FEBS Open Bio (2016)

Release Date

2013-07-24

Peptides

DNA REPAIR AND RECOMBINATION PROTEIN RADA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA REPAIR AND RECOMBINATION PROTEIN RADA

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