SMTL ID : 4b9e.1

Structure of a putative epoxide hydrolase from Pseudomonas aeruginosa, with bound MFA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

6 x FAH: fluoroacetic acid(Non-covalent)

FAH.1: 6 residues within 4Å: Chain A: D.108, H.153, W.154, M.183, Y.215, H.275 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.215 Salt bridges: A:H.153, A:H.275 FAH.9: 8 residues within 4Å: Chain A: Y.68, G.69, E.70, S.71, R.72, D.204, A.206, V.207 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.204 FAH.11: 3 residues within 4Å: Chain A: E.213, R.216, A.217 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.216 Water bridges: A:E.213, A:R.216, A:G.220 FAH.12: 6 residues within 4Å: Chain B: D.108, H.153, W.154, M.183, Y.215, H.275 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.153, B:H.275 FAH.20: 8 residues within 4Å: Chain B: Y.68, G.69, E.70, S.71, R.72, D.204, A.206, V.207 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.204 FAH.22: 3 residues within 4Å: Chain B: E.213, R.216, A.217 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.216 Water bridges: B:R.216, B:G.220

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.48, R.49, H.191 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.5, A:H.48, A:H.191 Salt bridges: A:H.48, A:R.49 SO4.3: 1 residues within 4Å: Chain A: R.200 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.200 SO4.4: 1 residues within 4Å: Chain A: R.53 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.53, A:R.53 Salt bridges: A:R.53 SO4.5: 2 residues within 4Å: Chain A: R.235, Q.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.237, A:Q.237 Water bridges: A:R.235 Salt bridges: A:R.235 SO4.6: 5 residues within 4Å: Chain A: D.280, A.281, P.282, D.283, A.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.281, A:D.283, A:A.284 SO4.7: 1 residues within 4Å: Chain A: R.199 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.199 SO4.13: 3 residues within 4Å: Chain B: H.48, R.49, H.191 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.48, B:H.191 Salt bridges: B:H.48, B:R.49 SO4.14: 1 residues within 4Å: Chain B: R.200 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.200 SO4.15: 1 residues within 4Å: Chain B: R.53 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.53, B:R.53 Salt bridges: B:R.53 SO4.16: 2 residues within 4Å: Chain B: R.235, Q.237 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.237, B:Q.237 Water bridges: B:R.235 Salt bridges: B:R.235 SO4.17: 5 residues within 4Å: Chain B: D.280, A.281, P.282, D.283, A.284 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.281, B:D.283, B:D.283, B:A.284 SO4.18: 1 residues within 4Å: Chain B: R.199 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.196 Salt bridges: B:R.199

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: L.7, L.8, F.11, Y.13 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.7, A:L.7, A:Y.13 GOL.10: 5 residues within 4Å: Chain A: D.177, R.181, Y.190, L.195, R.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.177, A:R.199 Water bridges: A:D.177, A:D.177, A:I.189 GOL.19: 4 residues within 4Å: Chain B: L.7, L.8, F.11, Y.13 3 PLIP interactions: 3 interactions with chain B Water bridges: B:L.7, B:L.7, B:Y.13 GOL.21: 5 residues within 4Å: Chain B: D.177, R.181, Y.190, L.195, R.199 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.177, B:R.199 Water bridges: B:D.177, B:D.177, B:I.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moynie, L. et al., The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-02-06

Peptides

PROBABLE EPOXIDE HYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROBABLE EPOXIDE HYDROLASE

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