- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: P.41, L.42, S.43, K.59, G.61
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.59, A:G.61
PEG.7: 5 residues within 4Å:- Chain D: P.41, L.42, S.43, K.59, G.61
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.59, D:G.61
PEG.12: 5 residues within 4Å:- Chain G: P.41, L.42, S.43, K.59, G.61
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:K.59, G:G.61
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 5 residues within 4Å:- Chain B: R.101, A.138, G.139, S.140, R.141
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:G.139, B:S.140, B:S.140, B:R.141
- Water bridges: B:A.138, B:R.141, B:R.141, B:D.190, B:D.190, B:D.190
- Salt bridges: B:R.101, B:R.141
PO4.4: 2 residues within 4Å:- Chain A: R.114
- Chain B: R.100
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain A- Water bridges: B:R.100, B:R.100, B:R.100, A:V.88, A:V.88, A:R.114, A:D.117, A:D.117
- Salt bridges: B:R.100, A:R.114
PO4.8: 5 residues within 4Å:- Chain E: R.101, A.138, G.139, S.140, R.141
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:G.139, E:S.140, E:S.140, E:R.141
- Water bridges: E:A.138, E:R.141, E:R.141, E:D.190, E:D.190, E:D.190
- Salt bridges: E:R.101, E:R.141
PO4.9: 2 residues within 4Å:- Chain D: R.114
- Chain E: R.100
10 PLIP interactions:6 interactions with chain D, 4 interactions with chain E- Water bridges: D:V.88, D:V.88, D:R.114, D:D.117, D:D.117, E:R.100, E:R.100, E:R.100
- Salt bridges: D:R.114, E:R.100
PO4.13: 5 residues within 4Å:- Chain H: R.101, A.138, G.139, S.140, R.141
12 PLIP interactions:12 interactions with chain H- Hydrogen bonds: H:G.139, H:S.140, H:S.140, H:R.141
- Water bridges: H:A.138, H:R.141, H:R.141, H:D.190, H:D.190, H:D.190
- Salt bridges: H:R.101, H:R.141
PO4.14: 2 residues within 4Å:- Chain G: R.114
- Chain H: R.100
10 PLIP interactions:6 interactions with chain G, 4 interactions with chain H- Water bridges: G:V.88, G:V.88, G:R.114, G:D.117, G:D.117, H:R.100, H:R.100, H:R.100
- Salt bridges: G:R.114, H:R.100
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.5: 6 residues within 4Å:- Chain A: H.2, S.4, E.107
- Chain B: I.103, S.106, K.107
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.2, B:K.107
NA.10: 6 residues within 4Å:- Chain D: H.2, S.4, E.107
- Chain E: I.103, S.106, K.107
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:K.107, D:E.107
NA.15: 6 residues within 4Å:- Chain G: H.2, S.4, E.107
- Chain H: I.103, S.106, K.107
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:E.107, G:E.107, H:K.107
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction. Archaea (2012)
- Release Date
- 2012-10-03
- Peptides
- PROBABLE EXOSOME COMPLEX EXONUCLEASE 2: ADG
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1: BEH
PROBABLE EXOSOME COMPLEX RNA-BINDING PROTEIN 1: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
IF
II
I
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction. Archaea (2012)
- Release Date
- 2012-10-03
- Peptides
- PROBABLE EXOSOME COMPLEX EXONUCLEASE 2: ADG
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1: BEH
PROBABLE EXOSOME COMPLEX RNA-BINDING PROTEIN 1: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
IF
II
I