SMTL ID : 4bby.2 (1 other biounit)

MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: WILD-TYPE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, A.280, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:W.96, A:H.189, A:D.303, A:A.512 Hydrogen bonds: A:G.236, A:G.237, A:G.238, A:T.239, A:T.239, A:T.239, A:S.240, A:D.303, A:S.304, A:S.304, A:T.309, A:G.312, A:S.315, A:T.316, A:S.319, A:S.319, A:G.369, A:I.374, A:I.374, A:N.654, A:N.656 Water bridges: A:G.311, A:T.316, A:T.316, A:H.617 pi-Cation interactions: A:H.616 FAD.2: 34 residues within 4Å: Chain B: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:W.96, B:W.96, B:H.189, B:D.303, B:A.512 Hydrogen bonds: B:G.236, B:G.237, B:G.238, B:T.239, B:T.239, B:S.240, B:G.244, B:D.303, B:S.304, B:S.304, B:T.309, B:T.309, B:G.312, B:S.315, B:S.319, B:S.319, B:I.374, B:I.374, B:N.654, B:N.656 Water bridges: B:T.260, B:T.316, B:T.316, B:E.368, B:G.369, B:H.617

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.380 Chain B: K.323, T.570, Y.571, D.572 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.572 Water bridges: B:K.323, B:K.323, B:A.573, A:K.380 Salt bridges: B:K.323, A:K.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nenci, S. et al., Precursor of Ether Phospholipids is Synthesized by a Flavoenzyme Through Covalent Catalysis. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-07

Peptides

ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL

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