SMTL ID : 6gou.2 (1 other biounit)

Development of Alkyl Glycerone Phosphate Synthase Inhibitors: Complex with Inhibitor 2I

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 Ligands: F6T.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:W.96, A:W.96, A:H.189, A:D.303, A:A.512 Hydrogen bonds: A:G.236, A:G.237, A:G.238, A:T.239, A:T.239, A:T.239, A:S.240, A:D.303, A:S.304, A:S.304, A:T.309, A:G.312, A:S.315, A:T.316, A:S.319, A:S.319, A:I.374, A:I.374, A:N.654, A:N.656 FAD.3: 34 residues within 4Å: Chain B: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:W.96, B:W.96, B:H.189, B:D.303, B:A.512 Hydrogen bonds: B:G.236, B:G.237, B:G.238, B:T.239, B:T.239, B:T.239, B:S.240, B:D.303, B:S.304, B:S.304, B:T.309, B:G.312, B:S.315, B:S.319, B:S.319, B:I.374, B:I.374, B:N.654, B:N.656

1 x F6T: (3~{S})-3-[2,6-bis(fluoranyl)phenyl]-~{N}-[(2-oxidanylidene-1,3-dihydrobenzimidazol-5-yl)methyl]butanamide(Non-covalent)

F6T.2: 14 residues within 4Å: Chain A: D.303, I.511, M.514, R.515, G.525, E.526, S.527, Y.578, Y.580, F.581, A.582, H.616, H.617 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.511, A:Y.580, A:A.582 Hydrogen bonds: A:D.303, A:S.527, A:H.617

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stazi, G. et al., Development of alkyl glycerone phosphate synthase inhibitors: Structure-activity relationship and effects on ether lipids and epithelial-mesenchymal transition in cancer cells. Eur J Med Chem (2018)

Release Date

2019-01-02

Peptides

Alkyldihydroxyacetonephosphate synthase, peroxisomal: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Alkyldihydroxyacetonephosphate synthase, peroxisomal

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